#WARNING:no index is registered index "YP_009725307.1" in "https://rest.uniprot.org/uniprotkb/" url "https://rest.uniprot.org/uniprotkb/YP_009725307.1.txt".
Please visit the UniProt website(https://www.uniprot.org), and get a proper ID/AC for your query protein.
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DOWNLOAD: [sequence-replaced 3D model] [for PyMOL] [3D template] [Modeller script]
ALL MOLECULES IN THE BIOLOGICAL UNIT: |
MOLECULES | contact sites | |||||
model | mark | query | asym_id oper (auth_asym_id) |
type | description | a(query A) |
1 | a | A(queryA) | C 1 (A) | polymer(polypeptide(L)) [925 aa] | RNA-directed RNA polymerase :R1AB_SARS2 | |
2 | b | B 1 (T) | polymer(polyribonucleotide) | RNA (5'-R(P*CP*CP*CP*UP*AP*UP*AP*AP*CP*UP*UP*AP*AP*UP*CP*UP*CP*AP*CP*AP*UP*AP*GP*C)-3') | 496N 500K 501S 507N 541Q 543N 557V 558A 569R 577K 590G 592S 594F 595Y 682S 683G 684D 685A 689Y 857E 860V 864I 914R 915Y 920F 924M (identity: 100.0 %/100.0 %) |
ALIGNMENTS |
MODEL[1] Protein A "queryA" TEMPLATE:7dok_C_1 identity=100.0% |
queryA 5:QSFLNRVCGVSAARLTPCGTGTSTDVVYRAFDIYNDKVAGFAKFLKTNCCRFQEKDEDDNLIDSYFVVKRHTFSNYQHEETIYNLLKDCPAVAKHDFFKF: 104 :****************************************************************************************************: 7dok_C_1 6:QSFLNRVCGVSAARLTPCGTGTSTDVVYRAFDIYNDKVAGFAKFLKTNCCRFQEKDEDDNLIDSYFVVKRHTFSNYQHEETIYNLLKDCPAVAKHDFFKF: 105 SecStr : HHHHHHH SS EEESSSTTS EEEEEEEE SS EEEEEEEE SEEEEEEE TT EEEEEEEEEE HHHHHHHHHHHHHHTT SSB EEEEEEE: ExpBur :eebbeebbeeeebebeeebeeeeebebebbbbeeeeebbbbbbbeeeebbbbbbeeeeeeeeeebbbbbbeeeebbeebeebbeebeebebbbebbbbee: queryA 105:RIDGDMVPHISRQRLTKYTMADLVYALRHFDEGNCDTLKEILVTYNCCDDDYFNKKDWYDFVENPDILRVYANLGERVRQALLKTVQFCDAMRNAGIVGV: 204 :****************************************************************************************************: 7dok_C_1 106:RIDGDMVPHISRQRLTKYTMADLVYALRHFDEGNCDTLKEILVTYNCCDDDYFNKKDWYDFVENPDILRVYANLGERVRQALLKTVQFCDAMRNAGIVGV: 205 SecStr :ESSSSEEEEEEEEEE SSBHHHHHHHHHS TTS HHHHHHHHHTTSS GGGTTSTTTT TTT TTHHHHHHTTHHHHHHHHHHHHHHHHHHHHTTEEEE: ExpBur :eeeeeeebbbbbbebbebbbbbbbbbbbbbeeeebeebeebbeebebbeeebbeeeebbbbbebeebbebbbebbeebbebbeebbebbebbeebbbebe: queryA 205:LTLDNQDLNGNWYDFGDFIQTTPGSGVPVVDSYYSLLMPILTLTRALTAESHVDTDLTKPYIKWDLLKYDFTEERLKLFDRYFKYWDQTYHPNCVNCLDD: 304 :****************************************************************************************************: 7dok_C_1 206:LTLDNQDLNGNWYDFGDFIQTTPGSGVPVVDSYYSLLMPILTLTRALTAESHVDTDLTKPYIKWDLLKYDFTEERLKLFDRYFKYWDQTYHPNCVNCLDD: 305 SecStr : GGGBBTT B SS EE STT EE HHHHHHHHHHHHHTTGGGGGGBGGG TTS B TT HHHHHHHHHHHSTT S SSGGG SSH: ExpBur :bbbbbbbbebbbbebbebeeeeeeebebebbbbbbbbbbbbbbbebbebbbbeeeeeeeeeeeeeeeeeebbeebeebbeebbebbebebbbbbeebeeb: queryA 305:RCILHCANFNVLFSTVFPPTSFGPLVRKIFVDGVPFVVSTGYHFRELGVVHNQDVNLHSSRLSFKELLVYAADPAMHAASGNLLLDKRTTCFSVAALTNN: 404 :****************************************************************************************************: 7dok_C_1 306:RCILHCANFNVLFSTVFPPTSFGPLVRKIFVDGVPFVVSTGYHFRELGVVHNQDVNLHSSRLSFKELLVYAADPAMHAASGNLLLDKRTTCFSVAALTNN: 405 SecStr :HHHHHHHHHHHHHTTTS TTSSEEEEEEEEETTEEEEEEEEEEETTTEEEE SS SEESS HHHHHHHHS HHHHHHHSEE SS SS EEEE SSS: ExpBur :bbbbbbbbbbbbbbebbeeebbbebeeebebeeeeebbbbbbbbebbbbbebeeeeeebeebeeeeebbbebbbbebeeeeeebebeebebebebbeeee: queryA 405:VAFQTVKPGNFNKDFYDFAVSKGFFKEGSSVELKHFFFAQDGNAAISDYDYYRYNLPTMCDIRQLLFVVEVVDKYFDCYDGGCINANQVIVNNLDKSAGF: 504 :****************************************************************************************************: 7dok_C_1 406:VAFQTVKPGNFNKDFYDFAVSKGFFKEGSSVELKHFFFAQDGNAAISDYDYYRYNLPTMCDIRQLLFVVEVVDKYFDCYDGGCINANQVIVNNLDKSAGF: 505 SecStr : B EE HHHHHHHHHTT S TT S B B TTHHHHHHTTGGG HHHHHHHHHHHHHHTSSS GGG S SSS T: ExpBur :eeeeebeeeeebeebeebbeeeebbeeebebeeebebeebeeebbbebbbebebbeebbbbbbbbbbbbbbbeebbeebebbebebeebeeeeeeeebbb: Contact : b bb queryA 505:PFNKWGKARLYYDSMSYEDQDALFAYTKRNVIPTITQMNLKYAISAKNRARTVAGVSICSTMTNRQFHQKLLKSIAATRGATVVIGTSKFYGGWHNMLKT: 604 :****************************************************************************************************: 7dok_C_1 506:PFNKWGKARLYYDSMSYEDQDALFAYTKRNVIPTITQMNLKYAISAKNRARTVAGVSICSTMTNRQFHQKLLKSIAATRGATVVIGTSKFYGGWHNMLKT: 605 SecStr :TGGGT HHHHHHHS HHHHHHHHHHHTTS EEEEEE BSS EEEE HHHHHHHHHHHHHHHHHHHH SSSB TT STTTHHHHHHHH: ExpBur :bbeeeeebeebbeebeeeebeebbebbbebbbbbbbbbebeeebbeeeebebebebbbbbbbbbebbbbebbebbeeeeebbbbbeeebeebbbbebbee: Contact : b b b bb b b b b bb queryA 605:VYSDVENPHLMGWDYPKCDRAMPNMLRIMASLVLARKHTTCCSLSHRFYRLANECAQVLSEMVMCGGSLYVKPGGTSSGDATTAYANSVFNICQAVTANV: 704 :****************************************************************************************************: 7dok_C_1 606:VYSDVENPHLMGWDYPKCDRAMPNMLRIMASLVLARKHTTCCSLSHRFYRLANECAQVLSEMVMCGGSLYVKPGGTSSGDATTAYANSVFNICQAVTANV: 705 SecStr :HHTT SSEEEEE TTTTTS HHHHHHHHHHHHTT TTT HHHHHHHHHHHHHHHTS EEESSSEEEE TTSTTHHHHHHHHHHHHHHHHHH: ExpBur :bbeebeeeebbbbebbebebbbbbbbbbbbbbbbbbbbeeebeeeebbbbbbbbbbbbbbbbbbbebbbbbbebbbbeebebbebbbbbbbbbbbbbbbb: Contact : bbbb b queryA 705:NALLSTDGNKIADKYVRNLQHRLYECLYRNRDVDTDFVNEFYAYLRKHFSMMILSDDAVVCFNSTYASQGLVASIKNFKSVLYYQNNVFMSEAKCWTETD: 804 :****************************************************************************************************: 7dok_C_1 706:NALLSTDGNKIADKYVRNLQHRLYECLYRNRDVDTDFVNEFYAYLRKHFSMMILSDDAVVCFNSTYASQGLVASIKNFKSVLYYQNNVFMSEAKCWTETD: 805 SecStr :HHHHSS SSS HHHHHHHHHHHHHHHT S HHHHHHHHHHHHHHEEEEEETTEEEEEEEHHHHHTTSS HHHHHHHHHHHH TTS EEES : ExpBur :bbbbbbbbeebeeeebeebbbebbebbbeeeeeeeebbeebbebbeebbbbbbeeeebbbbbbbebbeebbbbbbebbbbbbbbbbbbbbeeeebbebee: queryA 805:LTKGPHEFCSQHTMLVKQGDDYVYLPYPDPSRILGAGCFVDDIVKTDGTLMIERFVSLAIDAYPLTKHPNQEYADVFHLYLQYIRKLHDELTGHMLDMYS: 904 :****************************************************************************************************: 7dok_C_1 806:LTKGPHEFCSQHTMLVKQGDDYVYLPYPDPSRILGAGCFVDDIVKTDGTLMIERFVSLAIDAYPLTKHPNQEYADVFHLYLQYIRKLHDELTGHMLDMYS: 905 SecStr :TTS S BTTBEEEEEEETTEEEEEEE HHHHHHHHHEESSSGGGSSSS HHHHHHHHHHTGGGGG SSHHHHHHHHHHHHHHHHHHHHHHHHHHHHSS: ExpBur :beebbeebeebbbbebebeeeebbbbbbebbebbbbbbbbeeeeebebeeebeebbebbbebbbbeebeeeebbebbebbbebbeebbeebeeeeeeeee: Contact : b b b queryA 905:VMLTNDNTSRYWEPEFYEAMYTPHT: 929 :*************************: 7dok_C_1 906:VMLTNDNTSRYWEPEFYEAMYTPHT: 930 SecStr :S S TTTTSTHHHHTTSSS : ExpBur :eeeebeebeeebeeeebeebbeeee: Contact : bb b b |