#WARNING:no index is registered index "YP_009725307.1" in "https://rest.uniprot.org/uniprotkb/" url "https://rest.uniprot.org/uniprotkb/YP_009725307.1.txt".
Please visit the UniProt website(https://www.uniprot.org), and get a proper ID/AC for your query protein.
CurrentView:HTML5 Change to:[JAVA] |
DOWNLOAD: [sequence-replaced 3D model] [for PyMOL] [3D template] [Modeller script]
ALL MOLECULES IN THE BIOLOGICAL UNIT: |
MOLECULES | contact sites | |||||
model | mark | query | asym_id oper (auth_asym_id) |
type | description | a(query A) |
1 | a | A(queryA) | A 1 (A) | polymer(polypeptide(L)) [834 aa] | RNA-directed RNA polymerase :R1AB_SARS2 | |
2 | b | H 1 (A) | non-polymer(POP) | PYROPHOSPHATE 2- | 553R 622C 623D (identity: 100.0 %/92.8 %) |
ALIGNMENTS |
MODEL[1] Protein A "queryA" TEMPLATE:7bv2_A_1 identity=92.8% |
queryA 31:VYRAFDIYNDKVAGFAKFLKTNCCRFQEKDEDDNLIDSYFVVKRHTFSNYQHEETIYNLLKDCPAVAKHDFFKFRIDGDMVPHISRQRLTKYTMADLVYA: 130 :******************** ***************** *************: 7bv2_A_1 32:VYRAFDIYNDKVAGFAKFLKXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXETIYNLLKDCPAVAKHDXXXXXXXXXXXXXXXXXRLTKYTMADLVYA: 131 SecStr : EEEEEEE SS EEEEEEE --------------------------------- GGGGGTTTSTTB ----------------- S BHHHHHHH: ExpBur :eebbbbeeeeebbbbbebee---------------------------------eebbeebeebebbbeee-----------------eeeebbbbbbbbb: queryA 131:LRHFDEGNCDTLKEILVTYNCCDDDYFNKKDWYDFVENPDILRVYANLGERVRQALLKTVQFCDAMRNAGIVGVLTLDNQDLNGNWYDFGDFIQTTPGSG: 230 :****************************************************************************************************: 7bv2_A_1 132:LRHFDEGNCDTLKEILVTYNCCDDDYFNKKDWYDFVENPDILRVYANLGERVRQALLKTVQFCDAMRNAGIVGVLTLDNQDLNGNWYDFGDFIQTTPGSG: 231 SecStr :HHS TTS HHHHHHHHHTTSS GGGGGSTTTT TTT TTHHHHHGGGHHHHHHHHHHHHHHHHHHHHHTEEEE GGGBBTT B TT EE STT : ExpBur :bbbbeeeebeebeebbbebebbeeebbeeeebbbbbebeebbebbbebbeebbebbeebbebbebbeebbbebebbbbbbbbebbbebbeebeeeeeeeb: queryA 231:VPVVDSYYSLLMPILTLTRALTAESHVDTDLTKPYIKWDLLKYDFTEERLKLFDRYFKYWDQTYHPNCVNCLDDRCILHCANFNVLFSTVFPPTSFGPLV: 330 :****************************************************************************************************: 7bv2_A_1 232:VPVVDSYYSLLMPILTLTRALTAESHVDTDLTKPYIKWDLLKYDFTEERLKLFDRYFKYWDQTYHPNCVNCLDDRCILHCANFNVLFSTVFPPTSFGPLV: 331 SecStr :EEE HHHHHHHHHHHHHTTGGGGGGBGGG TTS B TT HHHHHHHHHHH TT S SSGGG SSHHHHHHHHHHHHHHTTTS GGGSEEEE: ExpBur :ebebbbbbbbbbbbbbbbebbebbebeeeeeeeeeeeeeeeeeebbeebeebbeebbebbeeebbbbbeebeebbbbbbbbbbbbbbbebbeeebbbebe: queryA 331:RKIFVDGVPFVVSTGYHFRELGVVHNQDVNLHSSRLSFKELLVYAADPAMHAASGNLLLDKRTTCFSVAALTNNVAFQTVKPGNFNKDFYDFAVSKGFFK: 430 :****************************************************************************************************: 7bv2_A_1 332:RKIFVDGVPFVVSTGYHFRELGVVHNQDVNLHSSRLSFKELLVYAADPAMHAASGNLLLDKRTTCFSVAALTNNVAFQTVKPGNFNKDFYDFAVSKGFFK: 431 SecStr :EEEEETTEEEEEEEEEEETTTEEEE S SEES HHHHHHHHH HHHHHHHSEE SS SS EEEESSSS B EE HHHHHHHHHTTTT : ExpBur :eebebeeeeeebbbbbbbebbbbbebeeeeeeeeebeebeebbeebbbbebeeeeeebebeebebebebbeeeeeeeeebeeeeebeebeebbeeeebee: queryA 431:EGSSVELKHFFFAQDGNAAISDYDYYRYNLPTMCDIRQLLFVVEVVDKYFDCYDGGCINANQVIVNNLDKSAGFPFNKWGKARLYYDSMSYEDQDALFAY: 530 :****************************************************************************************************: 7bv2_A_1 432:EGSSVELKHFFFAQDGNAAISDYDYYRYNLPTMCDIRQLLFVVEVVDKYFDCYDGGCINANQVIVNNLDKSAGFPFNKWGKARLYYDSMSYEDQDALFAY: 531 SecStr :TT S B B TTHHHHHHGGGGG HHHHHHHHHHHGGGGTT GGG S SSSB TTGGGT BHHHHHHHS HHHHHHHHHH: ExpBur :eebebeeebebeebeeebbbebbbebebbeebbbbbbbbbbbbbbbbebbeebebbbbebeebeeeebeeebbbbbeeebebeebbeebeeeebeebbeb: queryA 531:TKRNVIPTITQMNLKYAISAKNRARTVAGVSICSTMTNRQFHQKLLKSIAATRGATVVIGTSKFYGGWHNMLKTVYSDVENPHLMGWDYPKCDRAMPNML: 630 :****************************************************************************************************: 7bv2_A_1 532:TKRNVIPTITQMNLKYAISAKNRARTVAGVSICSTMTNRQFHQKLLKSIAATRGATVVIGTSKFYGGWHNMLKTVYSDVENPHLMGWDYPKCDRAMPNML: 631 SecStr :TTTS EEEEEE BSS EEEE HHHHHHHHHHHHHHHHHHHH SSSB TT STTTHHHHHHHHHTTT SSEEEEE TTHHHH HHH: ExpBur :bbebbbbbbbebebeeebeeeeebebebebbbbbbbbbebbbbebbeebeeeeeebbbbeeeeeebbbbebbeebbeebeeeebbbbebeebebbbbbbb: Contact : b bb queryA 631:RIMASLVLARKHTTCCSLSHRFYRLANECAQVLSEMVMCGGSLYVKPGGTSSGDATTAYANSVFNICQAVTANVNALLSTDGNKIADKYVRNLQHRLYEC: 730 :****************************************************************************************************: 7bv2_A_1 632:RIMASLVLARKHTTCCSLSHRFYRLANECAQVLSEMVMCGGSLYVKPGGTSSGDATTAYANSVFNICQAVTANVNALLSTDGNKIADKYVRNLQHRLYEC: 731 SecStr :HHHHHHHHGGG TTT HHHHHHHHHHHHHHHTS EEE SSEEEE S TTSTTHHHHHHHHHHHHHHHHHHHHHHTS GGG HHHHHHHHHHHHH: ExpBur :bbbbbbbbbbbbeeebeeeebbbbbbbbbbbbbbbbbbbeebbbbbebbbbeebebbebbbbbbbbbbbbbbbbbbbbebebeebeeeebeebbbebbeb: queryA 731:LYRNRDVDTDFVNEFYAYLRKHFSMMILSDDAVVCFNSTYASQGLVASIKNFKSVLYYQNNVFMSEAKCWTETDLTKGPHEFCSQHTMLVKQGDDYVYLP: 830 :****************************************************************************************************: 7bv2_A_1 732:LYRNRDVDTDFVNEFYAYLRKHFSMMILSDDAVVCFNSTYASQGLVASIKNFKSVLYYQNNVFMSEAKCWTETDLTKGPHEFCSQHTMLVKQGDDYVYLP: 831 SecStr :HHT S HHHHHHHHHHHHHHEEEEEETTEEEEEEEHHHHHTTSS HHHHHHHHHHHSS GGG EEE TTS S BTTBEEEEEEETTEEEEEE: ExpBur :bbeeeeeeeebbeebbebbeebbbbbbebeebbbbbbbebbeeebbbebebbbbbbbbbbbbbbeeeebbeeeebeebbeebeebebbebebeeeebbbb: queryA 831:YPDPSRILGAGCFVDDIVKTDGTLMIERFVSLAIDAYPLTKHPNQEYADVFHLYLQYIRKLHDELTGHMLDMYSVMLTNDNTSRYWEPEFYEAMYTPHT: 929 :***************************************************************** *******************: 7bv2_A_1 832:YPDPSRILGAGCFVDDIVKTDGTLMIERFVSLAIDAYPLTKHPNQEYADVFHLYLQYIRKLHDELXXXXXXXXXXXXXXXNTSRYWEPEFYEAMYTPHT: 930 SecStr :E HHHHHHHHHEES GGGGSHHHHHHHHHHHHHHHGGGGGSS HHHHHHHHHHHHHHHHHHHH --------------- TT TTSHHHHHGGGSS : ExpBur :bbebbebbbbbbbbeeeeeeebeebbeebbebbbebbbbeeeeeeebbebbebbbebbeebeeee---------------eeeeeeeeeebeebbbeee: |