#WARNING:no index is registered index "YP_009725307.1" in "https://rest.uniprot.org/uniprotkb/" url "https://rest.uniprot.org/uniprotkb/YP_009725307.1.txt".
Please visit the UniProt website(https://www.uniprot.org), and get a proper ID/AC for your query protein.
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DOWNLOAD: [sequence-replaced 3D model] [for PyMOL] [3D template] [Modeller script]
ALL MOLECULES IN THE BIOLOGICAL UNIT: |
MOLECULES | contact sites | |||||
model | mark | query | asym_id oper (auth_asym_id) |
type | description | a(query A) |
1 | a | A(queryA) | A 1 (A) | polymer(polypeptide(L)) [927 aa] | RNA-directed RNA polymerase :R1AB_SARS2 | |
2 | b | F 1 (G) | polymer(polyribonucleotide) | RNA (5'-R(*UP*GP*UP*UP*CP*GP*AP*CP*GP*AP*CP*AP*CP*AP*GP*G*(F86)P*G)-3') | 499D 545K 557V 623D 682S 758L 759S 760D 813C 814S 836R 840A 849K 858R 861S 862L 865D (identity: 100.0 %/99.8 %) |
ALIGNMENTS |
MODEL[1] Protein A "queryA" TEMPLATE:7c2k_A_1 identity=99.8% |
queryA 1:SADAQSFLNRVCGVSAARLTPCGTGTSTDVVYRAFDIYNDKVAGFAKFLKTNCCRFQEKDEDDNLIDSYFVVKRHTFSNYQHEETIYNLLKDCPAVAKHD: 100 :****************************************************************************************************: 7c2k_A_1 3:SADAQSFLNRVCGVSAARLTPCGTGTSTDVVYRAFDIYNDKVAGFAKFLKTNCCRFQEKDEDDNLIDSYFVVKRHTFSNYQHEETIYNLLKDCPAVAKHD: 102 SecStr : HHHHHHHHHHHTTS EEE SS SS S EEEEEESSS EEEEEE SB EEE GGG EEEEE EEE HHHHHHHHHHHHHHTT SSB : ExpBur :eeeeeebbeebeeeeeeebeeeeeeeeeebeebbbbeeeeebbbbbebeeeebbbbbbeeeeeeeeebbbbbbeeeeebbeebeebbeebeebebbbebe: queryA 101:FFKFRIDGDMVPHISRQRLTKYTMADLVYALRHFDEGNCDTLKEILVTYNCCDDDYFNKKDWYDFVENPDILRVYANLGERVRQALLKTVQFCDAMRNAG: 200 :****************************************************************************************************: 7c2k_A_1 103:FFKFRIDGDMVPHISRQRLTKYTMADLVYALRHFDEGNCDTLKEILVTYNCCDDDYFNKKDWYDFVENPDILRVYANLGERVRQALLKTVQFCDAMRNAG: 202 SecStr :EEEE SSSS EEEEEE S SSBHHHHHHHHHS TTS HHHHHHHHHTTS HHHHHSTTTT SSS TTHHHHHHTTHHHHHHHHHHHHHHHHHHHHHT: ExpBur :bbeeebeeeebbbbbbbebbebbbbbbbbbbbbbeeeebebbeebbeebebbeeebbeeeebbbbbeeeebbebbeebbeebbebbebbbebbebbeeeb: queryA 201:IVGVLTLDNQDLNGNWYDFGDFIQTTPGSGVPVVDSYYSLLMPILTLTRALTAESHVDTDLTKPYIKWDLLKYDFTEERLKLFDRYFKYWDQTYHPNCVN: 300 :****************************************************************************************************: 7c2k_A_1 203:IVGVLTLDNQDLNGNWYDFGDFIQTTPGSGVPVVDSYYSLLMPILTLTRALTAESHVDTDLTKPYIKWDLLKYDFTEERLKLFDRYFKYWDQTYHPNCVN: 302 SecStr :EEEE GGGBBSS B SS EE STT EEE HHHHHHHTHHHHHTTGGGGGGBTTSSTTS B TT HHHHHHHHHHH TT S SSGGG: ExpBur :bebebbbbbbbbebbbbebbebeeeeeeebebebbbbbbbbbbbbbbbebbebbbbeeeeeeeeeeeeeeeeeebbeebeebbeebbebbeeebbbbbee: queryA 301:CLDDRCILHCANFNVLFSTVFPPTSFGPLVRKIFVDGVPFVVSTGYHFRELGVVHNQDVNLHSSRLSFKELLVYAADPAMHAASGNLLLDKRTTCFSVAA: 400 :****************************************************************************************************: 7c2k_A_1 303:CLDDRCILHCANFNVLFSTVFPPTSFGPLVRKIFVDGVPFVVSTGYHFRELGVVHNQDVNLHSSRLSFKELLVYAADPAMHAASGNLLLDKRTTCFSVAA: 402 SecStr : SSHHHHHHHHHHHHHHTTSS TTS EEEEEEEEETTEEEEEEEEEEETTTEEEE S SBS HHHHHHHHH HHHHHHTSEE TT SS EEEE: ExpBur :beebbbbbbbbbbbbbbbebbeeebbbebeeebebeeeeeebbbbbbbebbbbbebeeeeeebeebeebbebbbebbbbebbeeeeebebeebebebebb: queryA 401:LTNNVAFQTVKPGNFNKDFYDFAVSKGFFKEGSSVELKHFFFAQDGNAAISDYDYYRYNLPTMCDIRQLLFVVEVVDKYFDCYDGGCINANQVIVNNLDK: 500 :****************************************************************************************************: 7c2k_A_1 403:LTNNVAFQTVKPGNFNKDFYDFAVSKGFFKEGSSVELKHFFFAQDGNAAISDYDYYRYNLPTMCDIRQLLFVVEVVDKYFDCYDGGCINANQVIVNNLDK: 502 SecStr :SSSS B EE HHHHHHHHHTT S TT S B B TTHHHHHHGGGGG HHHHHHHHHHHHHHT S GGG TTS: ExpBur :eeeeeeeeebeeeeebeebeebbeeeebbeeeeebeeebebeebeeebbbebbbebebbeebbbbbbbbbbbbbbbbebbeebebbebebeebeeeebee: Contact : b queryA 501:SAGFPFNKWGKARLYYDSMSYEDQDALFAYTKRNVIPTITQMNLKYAISAKNRARTVAGVSICSTMTNRQFHQKLLKSIAATRGATVVIGTSKFYGGWHN: 600 :****************************************************************************************************: 7c2k_A_1 503:SAGFPFNKWGKARLYYDSMSYEDQDALFAYTKRNVIPTITQMNLKYAISAKNRARTVAGVSICSTMTNRQFHQKLLKSIAATRGATVVIGTSKFYGGWHN: 602 SecStr : BTGGGT HHHHHHHS HHHHHHHHHHTTTS EEEEEE BSS EEEE HHHHHHHHHHHHHHHHHHTT SSSSB S STTTHHHH: ExpBur :ebbbbbeeeeebeebbeebeeeebeebbebbbebbbbbbbebebeeebbeeeebebebebbbbbbbbbebbbbebbeebeeeeebbbbbebebeeebbee: Contact : b b queryA 601:MLKTVYSDVENPHLMGWDYPKCDRAMPNMLRIMASLVLARKHTTCCSLSHRFYRLANECAQVLSEMVMCGGSLYVKPGGTSSGDATTAYANSVFNICQAV: 700 :****************************************************************************************************: 7c2k_A_1 603:MLKTVYSDVENPHLMGWDYPKCDRAMPNMLRIMASLVLARKHTTCCSLSHRFYRLANECAQVLSEMVMCGGSLYVKPGGTSSGDATTAYANSVFNICQAV: 702 SecStr :HHHHHTSS SSEEEEE TTHHHH HHHHHHHHHHHHTT SSS HHHHHHHHHHHHHHHTS EEEESSEEEE S TT TTHHHHHHHHHHHHHH: ExpBur :bbeebbeebeeeebbbbebbebebbbbbbbbbbbbbbbbbbbeeebeeeeebbbbbbbbbbbbbbbbbbebbbbebebbbbeebebbebbbbbbbbbbbb: Contact : b b queryA 701:TANVNALLSTDGNKIADKYVRNLQHRLYECLYRNRDVDTDFVNEFYAYLRKHFSMMILSDDAVVCFNSTYASQGLVASIKNFKSVLYYQNNVFMSEAKCW: 800 :****************************************************************************************************: 7c2k_A_1 703:TANVNALLSTDGNKIADKYVRNLQHRLYECLYRNRDVDTDFVNEFYAYLRKHFSMMILSDDAVVCFNSTYASQGLVASIKNFKSVLYYQNNVFMSEAKCW: 802 SecStr :HHHHHHHHTS GGG HHHHHHHHHHHHHHHS S HHHHHHHHHHHHHHEEEEEETTEEEEEEEHHHHHHTSS HHHHHHHHHHHHS TTS E: ExpBur :bbbbbbbbbbbbeebeeeebeebbbebbebbbeeeeeeeebbeebbebbeebbbbbbebeebbbbbbbebbeebbbbebebbbbbbbbbbbbbbeeeebb: Contact : bbb queryA 801:TETDLTKGPHEFCSQHTMLVKQGDDYVYLPYPDPSRILGAGCFVDDIVKTDGTLMIERFVSLAIDAYPLTKHPNQEYADVFHLYLQYIRKLHDELTGHML: 900 :****************************************************************************************************: 7c2k_A_1 803:TETDLTKGPHEFCSQHTMLVKQGDDYVYLPYPDPSRILGAGCFVDDIVKTDGTLMIERFVSLAIDAYPLTKHPNQEYADVFHLYLQYIRKLHDELTGHML: 902 SecStr :EES SSS S BTTBEEEEEE SSSEEEEEE HHHHHHHHHEESSGGGGSSTT HHHHHHHHHHHGGGGGSSSHHHHHHHHHHHHHHHHHHHHHHHHHH: ExpBur :eeeebeebbeebeebebbebeeeeeebbbbbbebbebbbbbbbbeeeeebebbeebeebbebbbebbbbeebeeeebbebbebbbebbeebbeeeeeeee: Contact : bb b b b b bb b queryA 901:DMYSVMLTNDNTSRYWEPEFYEAMYTPHT: 929 :******* ********************: 7c2k_A_1 903:DMYSVMLXXDNTSRYWEPEFYEAMYTPHT: 931 SecStr :HHSS -- GGGSSTHHHHHTTS : ExpBur :eeeeeee--eeeeebeeeeebeebbeeee: |