#WARNING:no index is registered index "YP_009725307.1" in "https://rest.uniprot.org/uniprotkb/" url "https://rest.uniprot.org/uniprotkb/YP_009725307.1.txt".
Please visit the UniProt website(https://www.uniprot.org), and get a proper ID/AC for your query protein.
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DOWNLOAD: [sequence-replaced 3D model] [for PyMOL] [3D template] [Modeller script]
ALL MOLECULES IN THE BIOLOGICAL UNIT: |
MOLECULES | contact sites | |||||
model | mark | query | asym_id oper (auth_asym_id) |
type | description | a(query A) |
1 | a | A(queryA) | A 1 (A) | polymer(polypeptide(L)) [832 aa] | RNA-directed RNA polymerase :R1AB_SARS2 | |
2 | b | E 1 (T) | polymer(polyribonucleotide) | RNA (5'-R(P*AP*UP*UP*UP*UP*AP*AP*UP*AP*GP*CP*UP*UP*CP*UP*UP*AP*G)-3') | 496N 500K 501S 543N 558A 590G 592S 595Y 682S 683G 684D 685A 689Y 924M (identity: 100.0 %/92.7 %) |
ALIGNMENTS |
MODEL[1] Protein A "queryA" TEMPLATE:7l1f_A_1 identity=92.7% |
queryA 32:YRAFDIYNDKVAGFAKFLKTNCCRFQEKDEDDNLIDSYFVVKRHTFSNYQHEETIYNLLKDCPAVAKHDFFKFRIDGDMVPHISRQRLTKYTMADLVYAL: 131 :******************* ***************** *************: 7l1f_A_1 1:YRAFDIYNDKVAGFAKFLKXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXETIYNLLKDCPAVAKHDXXXXXXXXXXXXXXXXXXLTKYTMADLVYAL: 100 SecStr : EEEEE SS EEEEE --------------------------------- TTTTTSTTSTTB ------------------ SS HHHHHHTT: ExpBur :eebbbbeeeebbbbbeeee---------------------------------eebeeebeeeebbeeee------------------eeebbbbbbbbbb: queryA 132:RHFDEGNCDTLKEILVTYNCCDDDYFNKKDWYDFVENPDILRVYANLGERVRQALLKTVQFCDAMRNAGIVGVLTLDNQDLNGNWYDFGDFIQTTPGSGV: 231 :****************************************************************************************************: 7l1f_A_1 101:RHFDEGNCDTLKEILVTYNCCDDDYFNKKDWYDFVENPDILRVYANLGERVRQALLKTVQFCDAMRNAGIVGVLTLDNQDLNGNWYDFGDFIQTTPGSGV: 200 SecStr :TS TTS HHHHHHHHHTTS SSSSSSSS S TTT TTHHHHHTTSHHHHHHHHHHHHHHHHHHHHHTEEEE GGGB SSS B S EE TT : ExpBur :bebeeeebeebeebbeeeebbeeebbeeeebbbbeebeebeebbeebbeebbebbeebbebbeebeeebbebebebbbbbbebebeeeeebeeeeeeebe: queryA 232:PVVDSYYSLLMPILTLTRALTAESHVDTDLTKPYIKWDLLKYDFTEERLKLFDRYFKYWDQTYHPNCVNCLDDRCILHCANFNVLFSTVFPPTSFGPLVR: 331 :****************************************************************************************************: 7l1f_A_1 201:PVVDSYYSLLMPILTLTRALTAESHVDTDLTKPYIKWDLLKYDFTEERLKLFDRYFKYWDQTYHPNCVNCLDDRCILHCANFNVLFSTVFPPTSFGPLVR: 300 SecStr :EE HHHHHHHHHHHHHHTTTSSSSBSSS SSS B TT HHHHHHHHHHSTT SS SSSSS SSSHHHHHHHHHHHHTTTS TTS EE : ExpBur :bebbbbbbbbbbbbbbbebbebbbbeeeeeeeeeeeeeeeeeebeebbeebbeebbeebeeebebebeebeebebbbbbbbbbbbbbebbeeebbeebee: queryA 332:KIFVDGVPFVVSTGYHFRELGVVHNQDVNLHSSRLSFKELLVYAADPAMHAASGNLLLDKRTTCFSVAALTNNVAFQTVKPGNFNKDFYDFAVSKGFFKE: 431 :****************************************************************************************************: 7l1f_A_1 301:KIFVDGVPFVVSTGYHFRELGVVHNQDVNLHSSRLSFKELLVYAADPAMHAASGNLLLDKRTTCFSVAALTNNVAFQTVKPGNFNKDFYDFAVSKGFFKE: 400 SecStr :EEEETTEEEE EEE SSS EEE S SB SS HHHHHHHHH THHHHTTSEE SSS EEEESSS EE HHHHHHHTTTT S: ExpBur :ebebeeeeeebbbbbbbebbbbbebeeeeeeeeeeeebeebbeebbbeebeeeeeeeebeebebebebbeeeeeeeeebeeeeebeebeebbeeeeeeee: queryA 432:GSSVELKHFFFAQDGNAAISDYDYYRYNLPTMCDIRQLLFVVEVVDKYFDCYDGGCINANQVIVNNLDKSAGFPFNKWGKARLYYDSMSYEDQDALFAYT: 531 :****************************************************************************************************: 7l1f_A_1 401:GSSVELKHFFFAQDGNAAISDYDYYRYNLPTMCDIRQLLFVVEVVDKYFDCYDGGCINANQVIVNNLDKSAGFPFNKWGKARLYYDSMSYEDQDALFAYT: 500 SecStr :SSS S B TTHHHHHHGGGGG SHHHHHHHHHGGGGS S GGG S S BTGGGT TTHHHHSS HHHHHHHHHHT: ExpBur :eeeeebeeeeeeeeeebebebbeebeebeebbbbbbbbebbbbbbeebbeebebbbbebeeeeeeeeeeebbbbbeeebebeebeeebeeeebeebbeeb: Contact : b bb queryA 532:KRNVIPTITQMNLKYAISAKNRARTVAGVSICSTMTNRQFHQKLLKSIAATRGATVVIGTSKFYGGWHNMLKTVYSDVENPHLMGWDYPKCDRAMPNMLR: 631 :****************************************************************************************************: 7l1f_A_1 501:KRNVIPTITQMNLKYAISAKNRARTVAGVSICSTMTNRQFHQKLLKSIAATRGATVVIGTSKFYGGWHNMLKTVYSDVENPHLMGWDYPKCDRAMPNMLR: 600 SecStr :TT BBB BSSS B HHHHHHHHHHHHHHHHHHTT SSSSB S STTTHHHHHHHHHTSS SSEEE TTSTT HHHH: ExpBur :bebbbbbbbebeeeeeeeeeeebebebebbbbbbbbbebbbbebeeebeeeeeebbbeeeeeeebbbeebbeebbeeeeebebbbbebbebebbbbbbbb: Contact : b b b b b queryA 632:IMASLVLARKHTTCCSLSHRFYRLANECAQVLSEMVMCGGSLYVKPGGTSSGDATTAYANSVFNICQAVTANVNALLSTDGNKIADKYVRNLQHRLYECL: 731 :****************************************************************************************************: 7l1f_A_1 601:IMASLVLARKHTTCCSLSHRFYRLANECAQVLSEMVMCGGSLYVKPGGTSSGDATTAYANSVFNICQAVTANVNALLSTDGNKIADKYVRNLQHRLYECL: 700 SecStr :HHHHHHTT TTT HHHHHHHHHHHHHHHTS BBSSSSEE SS SS TTHHHHHHHHHHHHHHHHHHHHHHTS TTT HHHHHHHHHHHHHH: ExpBur :bbbbbbbbeebeeebeeeeebbbbbbbbbbbbebebbbeebbbebebbbbeebebbeebbbbbbbbbbbbbbbbbbbebbbeebeeeebeebbeebbebb: Contact : bbbb b queryA 732:YRNRDVDTDFVNEFYAYLRKHFSMMILSDDAVVCFNSTYASQGLVASIKNFKSVLYYQNNVFMSEAKCWTETDLTKGPHEFCSQHTMLVKQGDDYVYLPY: 831 :****************************************************************************************************: 7l1f_A_1 701:YRNRDVDTDFVNEFYAYLRKHFSMMILSDDAVVCFNSTYASQGLVASIKNFKSVLYYQNNVFMSEAKCWTETDLTKGPHEFCSQHTMLVKQGDDYVYLPY: 800 SecStr :HT S HHHHHHHHHHHHHHEEEEEETTEEEEEEETTTTTTTSS HHHHHHHHHHTS TTT B SSS S SSS EE EEETTEEE EE: ExpBur :beeeeeeeebbeebeebbeeebbbbbeeebbbbbbbeeeeeeebbbeeebbbbbbbbbbbbbbeeeebbebeeeeebbeebeebbbbebeeeeeebbbbb: queryA 832:PDPSRILGAGCFVDDIVKTDGTLMIERFVSLAIDAYPLTKHPNQEYADVFHLYLQYIRKLHDELTGHMLDMYSVMLTNDNTSRYWEPEFYEAMYTPHT: 929 :**************************************************************** *******************: 7l1f_A_1 801:PDPSRILGAGCFVDDIVKTDGTLMIERFVSLAIDAYPLTKHPNQEYADVFHLYLQYIRKLHDELXXXXXXXXXXXXXXXNTSRYWEPEFYEAMYTPHT: 898 SecStr : HHHHHHHHHEES SGGGSHHHHHHHHHHHHHHT TTTT SSHHHHHHHHHHHHHHHHHHHH --------------- S TTSHHHHHHHT S : ExpBur :beebebbbbbbbbeeeeeeebeebeeebeebbbebbbbeeeeeeeeeebbebbbebbeebeeee---------------eeeeeeeeeebeebbeeee: Contact : b |