Protein Model on 6uub_D_1_M_1 (TEMPLATE: 6uub )

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ALL MOLECULES IN THE BIOLOGICAL UNIT:
[assembly_id:1]

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MOLECULES contact sites
model mark query asym_id oper
(auth_asym_id)
type description a(query F)
1 a FD 1 (DDD) polymer(polypeptide(L)) [1350 aa] DNA-directed RNA polymerase subunit beta' :RPOC_ECOLI
2 b M 1 (DDD) non-polymer(UTP) URIDINE 5'-TRIPHOSPHATE 458N 460D 731R 786T
FOCUSED TEMPLATE
MODEL[1] TEMPLATE:6uub_D_1
6uub_D_1       1:XXXXXXXXXXXXXXEEFDAIKIALASPDMIRSWSFGEVKKPETINYRTFKPERDGLFCARIFGPVKDYECLCGKYKRLKHRGVICEKCGVEVTQTKVRRE: 100
SecStr          :--------------   S EE     HHHHHHHEEEE      B SSS SB TT TT HHHH  SSTTB SSSSSBGGGGTT B SSS  B   GGGGGT:    
ExpBur          :--------------eeeeeeeeebebbeebeeebeeebeeeeeeeeeeeebeeebbbbbebbbbeeebebbeeebeeeeeeeeebeebebebbeeebbee:    

6uub_D_1     101:RMGHIELASPTAHIWFLKSLPSRIGLLLDMPLRDIERVLYFESYVVIEGGMTNLERQQILTEEQYLDALEEFGDEFDAKMGAEAIQALLKSMDLEQECEQ: 200
SecStr          : EEEEEEEEEEE GGGTTSSS SHHHHHT  HHHHHHHHTTSEEEEEEESSTTS TT EEEHHHHHHHHHTT SSEEEE SHHHHHHHHHH  TTHHHHH:    
ExpBur          :bbbbbebebbbbbbbbbebeebbbbebbebeeeebeebbebebbbbbebeeeebeeeeebeeeeeeebeeeebeebebebbbebbbebbeebebeeebee:    

6uub_D_1     201:LREELNETNSETKRKKLTKRIKLLEAFVQSGNKPEWMILTVLPVLPPDLRPLVPLDGGRFATSDLNDLYRRVINRNNRLKRLLDLAAPDIIVRNEKRMLQ: 300
SecStr          :HHHHHTTS  SHHHHHHHHHHHHHHHHHHHT  GGGGEEEEEEE  GGGS EEE TTS EEE HHHHHHHHHHHHHHHHHHHHHHT  HHHHHHHHHHHH:    
ExpBur          :beeebeeeeeeeeeeebbebbebbeebeeeebebbbbbbebbebebbeebebeeeeeeeeeeebbbebbeebbebbeebeebeeeeeeeeebbebbebbb:    

6uub_D_1     301:EAVDALLDNGRRGRAITGSNKRPLKSLADMIKGKQGRFRQNLLGKRVDYSGRSVITVGPYLRLHQCGLPKKMALELFKPFIYGKLELRGLATTIKAAKKM: 400
SecStr          :HHHHHHH HHHHSS  B TTSSB   SGGGGSSTTSHHHHTTSS   SSEEEEEEEE TTS TTEEEEEHHHHHHHSSHHHHHHHHHHTS SSHHHHHHH:    
ExpBur          :ebbbbbbbbeeeeebbeeeeeeebebebebeeeeebebeeeeeeeeeeeeeeeebeebeebebeebbbbeebbbebbbeebbeebeeeeebeeeeebeeb:    

6uub_D_1     401:VEREEAVVWDILDEVIREHPVLLNRAPTLHRLGIQAFEPVLIEGKAIQLHPLVCAAYNADFDGDQMAVHVPLTLEAQLEARALMMSTNNILSPANGEPII: 500
SecStr          :HHTT HHHHHHHHHHHTT  EEEE SS  SGGGEEEEEEEEESSS EEE GGGHHHHT  SSS EEEEE   SHHHHHHHHHTSBTTT  B SSSSSBS :    
ExpBur          :beeeeeebbebbeebbeebbbbbbbeeebbebbebbbebebbeeeebebbbbbbebbebeeeebebbbebbeeeebeeebeeeebbbebbbbbbbeebeb:    
Contact         :                                                         b b                                        

6uub_D_1     501:VPSQDVVLGLYYMTRDCVNAKGEGMVLTGPKEAERLYRSGLASLHARVKVRITEYEKDANGELVAKTSLKDTTVGRAILWMIVPKGLPYSIVNQALGKKA: 600
SecStr          :   THHHHHHHHHH   SS SS S   SSHHHHHHHHHHTS  TT EEEEEEEEEEE SSS EEEEEEEEEEEHHHHHHHTTS TTS GGGTSS   HHH:    
ExpBur          :bbeeebbbbbbbbbbebbbeeeeeeebebbebbeebbeeeebebbbebebebebeeeeeeeeeeeeeeeeebbbbbbbbbebbeebbebebbeeebbeeb:    

6uub_D_1     601:ISKMLNTCYRILGLKPTVIFADQIMYTGFAYAARSGASVGIDDMVIPEKKHEIISEAEAEVAEIQEQFQSGLVTAGERYNKVIDIWAAANDRVSKAMMDN: 700
SecStr          :HHHHHHHHHHHT SHHHHHHHHHHHHHHHHHHHHHT    STTS   TTHHHHHHHHHHHHHHHHHHHHHTSS HHHHHHHHHHHHHHHHHHHHHHHHHH:    
ExpBur          :beebbeebbbeeeeeebbebbbebbebbeebbeebeeeeeeeebbebeebeebbeebeeebeebeeeeeeeebeeeebeeebbebbeebbeebbebbbee:    

6uub_D_1     701:LQTETVINRDGQEEKQVSFNSIYMMADSGARGSAAQIRQLAGMRGLMAKPDGSIIETPITANFREGLNVLQYFISTHGARKGLADTALKTANSGYLTRRL: 800
SecStr          :HTT      TTS        HHHHHHHTTSS  HHHHHHHTS  B  B SSS B SS B   TTT   HHHHHHHHHHHHHHHHHHHSTHHHHHHHHHHH:    
ExpBur          :beeeeeebeeeeeeebebebbbbbebebebeeeeeebeeebbbbbebeeeeeeebeebbebbeeeeeeeebeeebeeeeeeeeeeeeeeeeebeebbebb:    
Contact         :                              b                                                      b              

6uub_D_1     801:VDVAQDLVVTEDDCGTHEGIMMTPVIEGGDVKEPLRDRVLGRVTAEDVLKPGTADILVPRNTLLHEQWCDLLEENSVDAVKVRSVVSCDTDFGVCAHCYG: 900
SecStr          :HHHTSS  EEES       EEE  B  SSS SB HHHHTSS  BSS    SSSSS  S SS    HHHHHHHHHHT   EEE  STT   SSSEEHHHH :    
ExpBur          :bbbbbebbbeeeebebeebbebeebeeebeeebebeebbebbbbbeebeeeeeeeeebeeeebbbeeebeebeebebeebbbbbbbbbebbebbbbebbb:    

6uub_D_1     901:RDLARGHIINKGEAIGVIAAQSIGEPGTQLTXXXXXXXXXXXXAAAESSIQVKNKGSIKLSNVKSVVNSSGKLVITSRNTELKLIDEFGRTKESYKVPYG:1000
SecStr          :EETTTTEE  TT  HHHHHHHHHHHHHHHH ------------     EEEE S EEEEEES  EEE SSS EEE  SSEEEEEE SSS EEEEEEE TT:    
ExpBur          :bbbbebeebeebbbbbebbbbbbbbbbbeeb------------eeeeeebebeeebebebbeeeeeebeeeeebbbbeebebebbeeeeeeebebebebb:    

6uub_D_1    1001:AVLAKGDGEQVAGGETVANWDPHTMPVITEVSGFVRFTDMIDGQTITRQTDELTGLSSLVVLDSAERTAGGKDLRPALKIVDAQGNDVLIPGTDMPAQYF:1100
SecStr          : EESS TT EE TTEEEEE  TT EEEE SS EEEEEES  BTTTEEEE  STT   EEEE  TTS  STTSS   EEEEE SSS B B TTSS B EEE:    
ExpBur          :bebeebeeeebeeeeebbebeeebebbbbebebebeebebeeeebbeeeeeeeeeebebbbbeeeebeeebeeeebbbbbbeeebeeeebeebeeebebe:    

6uub_D_1    1101:LPGKAIVQLEDGVQISSGDTLARIPQESGGTKDITGGLPRVADLFEARRPKEPAILAEISGIVSFGKETKGKRRLVITPVDGSDPYEEMIPKWRQLNVFE:1200
SecStr          :  TT EE S SS EE TT EEEEE        TTTTTHHHHHHHHTT   SS   B SS EE     EETTEE  EEB SS  S EE  B SS  BSS S:    
ExpBur          :beeebebeeeeeeebebbeebbebeeeeeeeeebeebbeebbebbbbeeeeeebbbbbeebebeeeeeeebeeebbbebeeeeeeeeeebeeebeeebee:    

6uub_D_1    1201:GERVERGDVISDGPEAPHDILRLRGVHAVTRYIVNEVQDVYRLQGVKINDKHIEVIVRQMLRKATIVNAGSSDFLEGEQVEYSRVKIANRELEANGKVGA:1300
SecStr          :S EE TT B B S   HHHHHHHH HHHHHHHHHHHHHHHHHTTT    HHHHHHHHHHHT EEEE S  SSS  TT EEEHHHHHHHHHHHHHH S   :    
ExpBur          :eeebeebeebbeeeebbbbbbebeebebbbebbbeebbebbbeeebebbbbbbbbbbbbbbbbbebeeeeeeebeeeeebbebebbeebeebeeeeeeeb:    

6uub_D_1    1301:TYSRDLLGITKASLATESFISAASFQETTRVLTEAAVAGKRDELRGLKENVIVGRLIPAGTGYAYHQDRMRRRAAG------------------------:1376
SecStr          : EEE    HHHHHTTSS HHHHHHHS HHHHHHHHHHHT EE   SHHHHHHTT   SSGGGHHHHHHHHHHHH -:    
ExpBur          :eeebebbbbeebbeebebbbbbbbbeebbebbbebbbeeeebebebbbbbebeeeeebbeebbeebeebeeeeee-:    


Input Residue Numbers for Focused Sites

ex) 2,15,123