Protein Model on 2yu9_E_1_R_1 (TEMPLATE: 2yu9 )

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ALL MOLECULES IN THE BIOLOGICAL UNIT:
[assembly_id:1]

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MOLECULES contact sites
model mark query asym_id oper
(auth_asym_id)
type description a(query F)
1 a FE 1 (B) polymer(polypeptide(L)) [1121 aa] DNA-directed RNA polymerase II 140 kDa polypeptide :RPB2_YEAST
2 b R 1 (A) non-polymer(UTP) URIDINE 5'-TRIPHOSPHATE 766R 837D 987K 1019S 1020R
FOCUSED TEMPLATE
MODEL[1] TEMPLATE:2yu9_E_1
2yu9_E_1       1:XXXXXXXXXXXXXXXXXXXDESAPITAEDSWAVISAFFREKGLVSQQLDSFNQFVDYTLQDIICEDSTLIXXXXXXXXXXXXXXXXXXEISFGKIYVTKP: 100
SecStr          :-------------------  SSB  GGGGHHHHTTTTTSS SSHHHHHHHHHHHHTHHHHHHTTT  B ------------------ EEEEEEEE   :    
ExpBur          :-------------------eeeeebebeebbbbbbbbbeeeebbbbbbebbbebbeeebbebbeeebebe------------------ebbbbebeeeeb:    

2yu9_E_1     101:MVNESDGVTHALYPQEARLRNLTYSSGLFVDVKKRTYEAIDXXXXXXXXXXXXXXXXXXXXXXKVFIGRLPIMLRSKNCYLSEATESDLYKLKECPFDMG: 200
SecStr          :EEE SSS EEE  HHHHHHTT B EEEEEEEEEE    S  ---------------------- EEEEEEE  TTSTTSGGGS  HHHHHHTT  TT   :    
ExpBur          :ebeeeeeeeeebebbebbbbbbbbbbbbebeeeeeeeeeee----------------------ebebbbbbbbbebebbebeeeeeeebeeeebbeebbb:    

2yu9_E_1     201:GYFIINGSEKVLIAQERSAGNIVQVFKKAAPSPISHVAEIRSALEKGSRFISTLQVKLYGREGSSARTIKATLPYIKQDIPIVIIFRALGIIPDGEILEH: 300
SecStr          :  EEBSS EEB  EEEEE SS  EEEE  TTSSEEEEEEE    SSS      EEEEEES TT S    EE  TT SS EEHHHHHHHHS  SHHHHHHH:    
ExpBur          :bbbbbeeebbbbbbbbbebebbbbbbeeeeeeebbbbbebebbeeeeeeeebebebbbebeeeeeebbbebbbbebeeebbbbbbbbbbebeeeeebeeb:    

2yu9_E_1     301:ICYDVNDWQMLEMLKPCVEDGFVIQDRETALDFIGRRGTALGIKKEKRIQYAKDILQKEFLPHITQLEGFESRKAFFLGYMINRLLLCALDRKDQDDRDH: 400
SecStr          :H   SS HHHHHHTHHHHTTSTT  SHHHHTTS  S SSSTT  TTHHHHHHHHHHHHTSSTTT  SSTT HHHHHHHHHHHHHHHHHHTTSS    S  :    
ExpBur          :bbbeeebeebeebbeebeeebeebeeeeebbeebeeeeeeeeeeeeeeeeebeebbbebbbbbbbeeeeebebbbbbbbbbbbebbbbbeeeeeebeebb:    

2yu9_E_1     401:FGKKRLDLAGPLLAQLFKTLFKKLTKDIFRYMQRTVEXXXXXXXXLAINAKTITSGLKYALATGNWGEQKKAMSSRAGVSQVLNRYTYSSTLSHLRRTNT: 500
SecStr          :GGGEEEE HHHHHHHHHHHHHHHHHTTTTTTTTT   --------    THHHHHHHHHHTTSS  SSS   SGGGG SSB    S HHHHHHHTSEEE :    
ExpBur          :bbbbbbbbbbebbbebbbebbeebbeebeeeeeeeee--------eeeebebbbebbeebbeeeebbbeeeeeeeeebbbeebebbbbbbbbbbbbbbbb:    

2yu9_E_1     501:PIXXXXXXAKPRQLHNTHWGLVCPAETPEGQACGLVKNLSLMSCISVGTDPMPIITFLSEWGMEPLEDYVPHQSPDATRVFVNGVWHGVHRNPARLMETL: 600
SecStr          :  ------   SS  GGGTTTB SS    SSSTTTSEEBBTT EE     SHHHHHHHTTSS B STT  STT TT EEEEETTEEEEEES HHHHHHHH:    
ExpBur          :ee------eeeeeebebbebbbbebbbeeeeeebbbbbbbbbbbbbebeeeeebeebbeeeebeebeebebeebeebbbbbbbbbbbbbbeebeebbeeb:    

2yu9_E_1     601:RTLRRKGDINPEVSMIRDIREKELKIFTDAGRVYRPLFIVEDDESLGHKELKVRKGHIAKLMATEYQDXXXXXXXXXEYTWSSLLNEGLVEYIDAEEEES: 700
SecStr          :HHHHHHTSS TT EEEEETTTTEEEEE  SS EEEEEEEEEE SSSS EEES BHHHHHHHHHHHS  ---------   HHHHHTTTSEEEEETTGGGG:    
ExpBur          :eebbbeeebebbbbbbbeeeeebbbbbbbbbbbbbbbbbbeeeeeeeeeebebeebebeebeebeeee---------ebebeebbeebbbbbbbbbbbee:    

2yu9_E_1     701:ILIAMQPEDLEPAXXXXXXXXDVDPAKRIRVSHHATTFTHCEIHPSMILGVAASIIPFPDHNQSPRNTYQSAMGKQAMGVFLTNYNVRMDTMANILYYPQ: 800
SecStr          :  EESSSSSSS  --------   TTS            EE S GGGSSBTTTTTSS GGGB HHHHHHHHHTTSSB SBS SGGGS   S  EEESS  :    
ExpBur          :beebebbeebbee--------eeeeeeeeeeeeeeeebebbbbbbbbbbbbbbbbbbbbeebeeebbbebbbbbbebbbbbbebeeebbeeebbbbeeee:    
Contact         :                                                                 b                                  

2yu9_E_1     801:KPLGTTRAMEYLKFRELPAGQNAIVAIACYSGYNQEDSMIMNQSSIDRGLFRSLFFRSYMDQEKKYGMSITETFEKPQRTNTLRMKHGTYDKLDDDGLIA: 900
SecStr          :  SSB TTGGGTTGGGS   EEEEEE    SSTT SSEEEEEHHHHHHTTT EEEEEEEEEES  S SS   EE     SS      S TTSS SSSB  :    
ExpBur          :ebebbbebbebbebeebbbbbbbebbbbeeeeebeeebbbbbebbbeebbbebbbbbbbebebeeeeeeeebebeebeeeebeebeeeebeebeeebbbe:    
Contact         :                                    b                                                               

2yu9_E_1     901:PGVRVSGEDVIIGKTTPISXXXXXXXXXXXXXSKRDASTPLRSTENGIVDQVLVTTNQDGLKFVKVRVRTTKIPQIGDKFASRHGQKGTIGITYRREDMP:1000
SecStr          :TT EEETT EEE EEE   -------------  EE  EE  SS EEEEEEEEEEE SS  EEEEEEEEEEE   SS  EE SSS   EEEEEE GGGS :    
ExpBur          :eeeebeeebbbbbbbbeee-------------eeebebeebeeebebbbeeeeeeebeeebebbbbbbebeeebeeebbbbbbbbbebebebebeeeebb:    
Contact         :                                                                                      b             

2yu9_E_1    1001:FTAEGIVPDLIINPHAIPSRMTVAHLIECLLSKVAALSGNEGDASPFTDITVEGISKLLREHGYQSRGFEVMYNGHTGKKLMAQIFFGPTYYQRLRHMVD:1100
SecStr          :EETT    SEE  GGGTTTTTB HHHHHHHHHHHHHHH S  B  SSSS  HHHHHHHHTTTTS TTS   EE TTT  B SS   EEEEEEEEBS  ST:    
ExpBur          :ebeeeebbbbbbbeebbeebebebbebbbbbbbbbeeeeeebebbbeeebbeeebbeebeeeeeeeebebebeeeeeeeeeeeebbbbbbbbbbbeebbe:    
Contact         :                  bb                                                                                

2yu9_E_1    1101:DKIHARARGPMQVLTRQPVEGRSRDGGLRFGEMERDCMIAHGAASFLKERLMEASDAFRVHICGICGLMTVIAKLNHNQFECKGCDNKIDIYQIHIPYAA:1200
SecStr          :TT    SS  B TTTS B S GGGT      HHHHHHHHHHT HHHHHHHHTTSS  EEEEEETTT SS      SS     SSS  SS EEEEEE HHH:    
ExpBur          :eeeeeeeeeeeeeebeeebeeeeeebeeeebeeeeeebeeeeeeeeeeeeebeeebeeebbbbeebbbbebeeeeeeeeeebeeeebeeebeeeebebeb:    

2yu9_E_1    1201:KLLFQELMAMNITPRLYTDRSRDF----------------------------------------------------------------------------:1224
SecStr          :HHHHHHHHHTT      S     -:    
ExpBur          :beeeeeeeeeeeebeeeeeeeee-:    


Input Residue Numbers for Focused Sites

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