Protein Model on 2yu9_D_1_R_1 (TEMPLATE: 2yu9 )

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ALL MOLECULES IN THE BIOLOGICAL UNIT:
[assembly_id:1]

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MOLECULES contact sites
model mark query asym_id oper
(auth_asym_id)
type description a(query F)
1 a FD 1 (A) polymer(polypeptide(L)) [1411 aa] DNA-directed RNA polymerase II largest subunit :RPB1_YEAST
2 b R 1 (A) non-polymer(UTP) URIDINE 5'-TRIPHOSPHATE 481D 483D
FOCUSED TEMPLATE
MODEL[1] TEMPLATE:2yu9_D_1
2yu9_D_1       1:XXGQQYSSAPLRTVKEVQFGLFSPEEVRAISVAKIRFPETMDETQTRAKIGGLNDPRLGSIDRNLKCQTCQEGMNECPGHFGHIDLAKPVFHVGFIAKIK: 100
SecStr          :--     SS       EE     HHHHHHH        S S SSS SS  SSSS TTT  SSS S STTS   TTT     EEEEEEEEEE GGGHHHHH:    
ExpBur          :--eeeeeeeeeeeeeebeeebebbeebeeebebebeeeebeeeeeeeeebebbbebebbbeeeeeebeeeeebeeebebeebbbebeebbbbbebbebbe:    

2yu9_D_1     101:KVCECVCMHCGKLLLDEHNELMRQALAIKDSKKRFAAIWTLCKTKMVCETDVPSXXXXXXLVSRGGCGNTQPTIRKDGLKLVGSWKXXXXXXXXXXXXLR: 200
SecStr          :HHHTTB TTT SBS  SSSTTTTHHHH  STTHHHHHHHHTTSS  B  S B  ------ B  S    B     EETTEE     ------------  :    
ExpBur          :ebbbbbbbeebebbbbeeeeebeebeeeeeeeebbeebbeebeeeeebeeebee------eeeeeeeeeebbebeeeeeebbbbee------------ee:    

2yu9_D_1     201:VLSTEEILNIFKHISVKDFTSLGFNEVFSRPEWMILTCLPVPPPPVRPSISFNESQRGEDDLTFKLADILKANISLETLEHNGAPHHAIEEAESLLQFHV: 300
SecStr          : B HHHHHHHHHSS STTTGGGT BTTTB TTTSEEEEEEE  GGGS    SSSSS    SSTTTTTTTHHHHHHHHTTTSS   GGGSSHHHHTTTTTT:    
ExpBur          :ebebeebbebbeebeeebbeebbbeeeebebbbbbbebbebbbbeebeeeeeeeeeebbeebbebbbbbbebbeebeeeeeeeeeeeebeebbeebbebb:    

2yu9_D_1     301:ATYMDNDIAGQPQALQKSGRPVKSIRARLKGKEGRIRGNLMGKRVDFSARTVISGDPNLELDQVGVPKSIAKTLTYPEVVTPYNIDRLTQLVRNGPNEHP: 400
SecStr          :HHHH   SSS     SSS SS   GGGGTSSSSSTTTTTTSS   SSEEEEEEEE TTS TTEEEEETTTTTT EEEEE  TTTSHHHHHHHTTTTTSSS:    
ExpBur          :bbbbbbeeeeeebeeeeeeeebebeeebeeeeebebeeeeeeeeeeeebebebeeeeebebebbbbbeebbeebbbebebeeebbeebeebbeebeeebe:    

2yu9_D_1     401:GAKYVIRDSGDRIDLRYSKRAGDIQLQYGWKVERHIMDNDPVLFNRQPSLHKMSMMAHRVKVIPYSTFRLNLSVTSPYNADFDGDEMNLHVPQSEETRAE: 500
SecStr          : EEEEE SSS EEETTS TTTT     TT EEEEE  SS  EEEE SS  STTSEEEEEEEEESSSSEEE TTSTTTTT  SSS EEEEE   STTTTHH:    
ExpBur          :bbbebbeeeeeebebeeeeebeebebeeebebbbbbbeebbbbbbbeeebbebbebbbebebbeeebbbbbbbbbebbebeeeebebbbebbeeeeebee:    
Contact         :                                                                                b b                 

2yu9_D_1     501:LSQLCAVPLQIVSPQSNKPCMGIVQDTLCGIRKLTLRDTFIELDQVLNMLYWVPDWDGVIPTPAIIKPKPLWSGKQILSVAIPNGIHLQRFDEGTTLLSP: 600
SecStr          :HHTTSBTTGGGEETTTTEES    THHHHHHHHHTSTT EE HHHHHHHHHHSTT  S     S  SSS  EEHHHHHTTTS TT EEE   SS  SS S:    
ExpBur          :beeeebbbebbbbbbbbebbbbbeeebbbbbbbbbeeebebeeebbeebbeebeeeeeeeeebebeeeeebbbbbebbbebbeebbbbeeeeeebeeebe:    

2yu9_D_1     601:KDNGMLIIDGQIIFGVVEKKTVGSSNGGLIHVVTREKGPQVCAKLFGNIQKVVNFWLLHNGFSTGIGDTIADGPTMREITETIAEAKKKVLDVTKEAQAN: 700
SecStr          :S  SEEEESSSEEEE  SHHHHSS SSSHHHHHHHHT HHHHHHHHHHHHHHHHHHHHTT     GGGS   HHHHHHHHHHHHHHHHHHHHHHHHHTTT:    
ExpBur          :ebbbbbbeebebebbbbbeebbbeeeebbbbbbbebebeeebbebbbbbbbbbbbbbeeeeeeeeeebbebeeebeeebeebbeebbeebeebbeeeeee:    

2yu9_D_1     701:LLTAKHGMTLRESFEDNVVRFLNEARDKAGRLAEVNLKDLNNVKQMVMAGSKGSFINIAQMSACVGQQSVEGKRIAFGFVDRTLPHFSKDDYSPESKGFV: 800
SecStr          :     TTS HHHHHHHHHHHHHHHHHHHHHHHHHSS  TT HHHHHHHHTSS  HHHHHTTTT  EE EETTEE    BTTBSSTTS TT  STTTTTEE:    
ExpBur          :ebeeeeebeeeebbebbbbebbeebbeebbeebeebbeeebebbbeeebebeeeeeebbeebbbbbbbebebebbeeeeeeebbeebeeeeeebebbbbb:    

2yu9_D_1     801:ENSYLRGLTPQEFFFHAMGGREGLIDTAVKTAETGYIQRRLVKALEDIMVHYDNTTRNSLGNVIQFIYGEDGMDAAHIEKQSLDTIGGSDAAFEKRYRVD: 900
SecStr          : S TTT   HHHHHHHHHHHHHHHHTTTTHHHHHHHHHHHHHTTTTT EE TTS EE SS  EEESSGGGTTB GGGEEEEE  TTSS HHHHTTTS   :    
ExpBur          :bebeeeeeeeebeebeeebeeeeeeeeeebeeebeebbbbbebbbbbbbbeeebbbeebeeeebbebbbebbbbbbebbebebebbeeeeeebeeebbbb:    

2yu9_D_1     901:LLNTDHTLDPSLLESGSEILGDLKLQVLLDEEYKQLVKDRKFLREVFVDGEANWPLPVNIRRIIQNAQQTFHIDHTKPSDLTIKDIVLGVKDLQENLLVL:1000
SecStr          :SSSTTSS  TTT SSGGGTSS STTHHHHHHHHHHHHHHHHHHHHHSTT   EEEEES HHHHHHHHHHHT   TTS     HHHHHHHHHHHHHH  S :    
ExpBur          :beeeeebbeeebbeebeebeeeeebbeebeebbeebeebbeebbeebeebebeeebbbbbebbbbbbeeeeeeeeeeebebebeebbebbeebbeebebb:    

2yu9_D_1    1001:RGKNEIIQNAQRDAVTLFCCLLRSRLATRRVLQEYRLTKQAFDWVLSNIEAQFLRSVVHPGEMVGVLAAQSIGEPATQMTLNTFHFAGVASKKVTSGVPR:1100
SecStr          :  SSSHHHHHHHHHHHHHHHHHHHHS HHHHTTTS   STTTHHHHHHHHHHHHHTB  TT  HHHHHHHHHHTGGGG   SS S TTSSS     SHHH:    
ExpBur          :eeeeeebeeebeebbeebbbbbbbbbbbbbbbeebbbbeebbeebbeebeebbeebbbeebebbbebbbbbbbebbbebeeebbeebbebbeeebbbbeb:    

2yu9_D_1    1101:LKEILNVAKNMKTPSLTVYLEPGHAADQEQAKLIRSAIEHTTLKSVTIASEIYYDPDPRSTVIPEDEEIIQLHFSLXXXXXXXXXXQQSPWLLRLELDRA:1200
SecStr          :HHHHHTT SS SS BB  BB SSSS TTHHHHHHHHTTS  BGGGTEEEEE     STTS S TT SSSS  SS  ----------   S EEEEEE SG:    
ExpBur          :bebbbebeeebeeebbbbebeeeebeeeeebeebbeebbbbbbeebbeeeeeeebeeeeeeebeebeebeeeeeee----------eebeebbbbbbeee:    

2yu9_D_1    1201:AMNDKDLTMGQVGERIKQTFKNDLFVIWSEDNDEKLIIRCRVVRXXXXXXXXXAEEDHMLKKIENTMLENITLRGVENIERVVMMKYDRKVPSPTGEYVK:1300
SecStr          :GGTTTT  HHHHHHHHHHHH SSEEEEE  TTSSS EEEEEE  ---------  GGGTTHHHHHHHHHS B SS TT    EEEEE  EEE TTSSEEE:    
ExpBur          :bbeebebebeebbeebeeeeeeebebbebeeebeebbbbbbbee---------eeeeeebeeeeeebbeebebbebeebebbbbeeeeeeeeeeebebee:    

2yu9_D_1    1301:EPEWVLETDGVNLSEVMTVPGIDPTRIYTNSFIDIMEVLGIEAGRAALYKEVYNVIASDGSYVNYRHMALLVDVMTTQGGLTSVTRHGFNRSNTGALMRC:1400
SecStr          :  EEEEE SB  HHHHTTSTTB TTT  BS HHHHHHHH HHHHHHHHHHHHHHHHTTTT    THHHHHHHHHTTTTSS   SSTTTGGGSSS SHHHH:    
ExpBur          :eebbbbbbebbbbeebeebeebbeeebebbbbbebbeeeeeeebbebbbebbeebbeeeeeebbebbbbbbbbbbbeeeeebbbbeebbbebeebbbbbb:    

2yu9_D_1    1401:SFEETVEILFEAGASAELDDCRGVSENVILGQMAPIGTGAFDVMIDEESL--------------------------------------------------:1450
SecStr          :TTSSHHHHHHHHHHS  EE   SHHHHHHTT   TTGGGGS        -:    
ExpBur          :bbbebbebeeebbbbbeebebebbbbbebeeeebeeeeeeeeeeeeeee-:    


Input Residue Numbers for Focused Sites

ex) 2,15,123