Protein Model on 1twf_A_1_P_1 (TEMPLATE: 1twf )

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ALL MOLECULES IN THE BIOLOGICAL UNIT:
[assembly_id:1] [assembly_id:2]

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MOLECULES contact sites
model mark query asym_id oper
(auth_asym_id)
type description a(query F)
1 a FA 1 (A) polymer(polypeptide(L)) [1419 aa] DNA-directed RNA polymerase II largest subunit :RPB1_YEAST
2 b P 1 (B) non-polymer(UTP) URIDINE 5'-TRIPHOSPHATE 481D 483D 485D
FOCUSED TEMPLATE
MODEL[1] TEMPLATE:1twf_A_1
1twf_A_1       1:XVGQQYSSAPLRTVKEVQFGLFSPEEVRAISVAKIRFPETMDETQTRAKIGGLNDPRLGSIDRNLKCQTCQEGMNECPGHFGHIDLAKPVFHVGFIAKIK: 100
SecStr          :-   S   S       EE     HHHHHHT       S  S TTS  S  SSSS SSS   TT   SSS    TTS       EEEEEEEE GGGHHHHH:    
ExpBur          :-eeeeeeeeeeeeeeebebebebbeebeeeebbebeebebbeeeeeeebbebbbeeebbbeeeeeebeebeeeeeeeeeeebbbebeebbbbbebbebbe:    

1twf_A_1     101:KVCECVCMHCGKLLLDEHNELMRQALAIKDSKKRFAAIWTLCKTKMVCETDVPSEDDPTQLVSRGGCGNTQPTIRKDGLKLVGSWKKDRATGDADEPELR: 200
SecStr          :HHHHHB TTT  BS  TTSHHHHHHHT  SHHHHHHHHHHHHTT  B  SEE  SS TTS EE  S   B    EE SS EEEEE SSSS TTS S EEE:    
ExpBur          :ebbbbbbbeebebbbbeeeeebeebeeeeeeeebbeebbeebeeeeebeeebebeeeeeeeeebbebeeebbebeeeebebbbebeeeeeeeebeeeeee:    

1twf_A_1     201:VLSTEEILNIFKHISVKDFTSLGFNEVFSRPEWMILTCLPVPPPPVRPSISFNESQRGEDDLTFKLADILKANISLETLEHNGAPHHAIEEAESLLQFHV: 300
SecStr          :EE HHHHHHHHTTS HHHHHHTT BTTTB GGGGEEEEE    TTTS     SSS     HHHHHHHHHHHHHHHHHHHHSS   HHHHHHHHHHHHHHH:    
ExpBur          :ebebeebbebbeebeeebbebbbbeeeebebbbbbbebbebbbbeebeeeeeeeeeeebebbbbbbbebbebbeebeeeeeeeeeeeebeebeeebbebb:    

1twf_A_1     301:ATYMDNDIAGQPQALQKSGRPVKSIRARLKGKEGRIRGNLMGKRVDFSARTVISGDPNLELDQVGVPKSIAKTLTYPEVVTPYNIDRLTQLVRNGPNEHP: 400
SecStr          :HHHH   SS     SS TT     STTS TTTTTTSSGGGTT S  SEEEEEEEE TTS TTEEEEEHHHHTT EEEEE  TTTHHHHHHHHHHTTTSSS:    
ExpBur          :bbbbbbeeeeeeeebeeeeeeeebeebbeeeebeeebbeeeeeeeeeebeeebbebeebbbbbbbbbeebbeebbbebebeeebbeebeebbebbbeebe:    

1twf_A_1     401:GAKYVIRDSGDRIDLRYSKRAGDIQLQYGWKVERHIMDNDPVLFNRQPSLHKMSMMAHRVKVIPYSTFRLNLSVTSPYNADFDGDEMNLHVPQSEETRAE: 500
SecStr          : EEEEE TT  EEETTS TTTT     TT EEEEE  TT EEEEE SS  SGGGEEEEEEEEESSSSEEE GGGHHHHT  SSS EEEEE   SHHHHHH:    
ExpBur          :bbebbbeeeeeebbbeeeeeeeeeebeeebebbbbbbeebbbbbbbeeebbebbebbbebebbeeebbebbebbbebbebeeeebebbbebbeeeeebee:    
Contact         :                                                                                b b b               

1twf_A_1     501:LSQLCAVPLQIVSPQSNKPCMGIVQDTLCGIRKLTLRDTFIELDQVLNMLYWVPDWDGVIPTPAIIKPKPLWSGKQILSVAIPNGIHLQRFDEGTTLLSP: 600
SecStr          :HHHHTBGGGGSEETTTTEES    HHHHHHHHHHHSTT EEEHHHHHHHHHHSTT  S     SB SSS EEEHHHHHHHHS TT  EEE  TT  TT T:    
ExpBur          :beeeebbbebbbbbbbbebbbbbeeebbbbbbbbbeeebebeeeebeebbeebeeeeeeeeebebeeeeebbbbbbbbbebbeebbbbebebeebeeebe:    

1twf_A_1     601:KDNGMLIIDGQIIFGVVEKKTVGSSNGGLIHVVTREKGPQVCAKLFGNIQKVVNFWLLHNGFSTGIGDTIADGPTMREITETIAEAKKKVLDVTKEAQAN: 700
SecStr          :T  SEEEETTEEEES   HHHHSS TTSHHHHHHHHH HHHHHHHHHHHHHHHHHHHHTT     GGGG   HHHHHHHHHHHHHHHHHHHHHHHHHHHT:    
ExpBur          :ebebbbbeebebebbbbbeebbbeeeebbbbbbbeeeeeeebbebbbbbbbbbebbbeeeeeeeeeebbebeeebbeebeebbeebeeebeebbeeeeee:    

1twf_A_1     701:LLTAKHGMTLRESFEDNVVRFLNEARDKAGRLAEVNLKDLNNVKQMVMAGSKGSFINIAQMSACVGQQSVEGKRIAFGFVDRTLPHFSKDDYSPESKGFV: 800
SecStr          :     TT  HHHHHHHHHHHHHHHHHHHHHHHHHHHS TT HHHHHHHHTSS  HHHHHHHHS  EE  BTTBS    BTTBSSTTS TT  STTTTTEE:    
ExpBur          :ebeeeeeeeeeebbeebbeebbeebbebbbeebeeebeeebbbbbeeebebeeeeeebbbebbbbbbbeeeeebbeeeeeeebbeebeeeeebbebbbbb:    

1twf_A_1     801:ENSYLRGLTPQEFFFHAMGGREGLIDTAVKTAETGYIQRRLVKALEDIMVHYDNTTRNSLGNVIQFIYGEDGMDAAHIEKQSLDTIGGSDAAFEKRYRVD: 900
SecStr          : S TTT   HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTT EE TTS EE TT  EEESSGGGTTB GGGEEEEE GGGSS HHHHHHHH   :    
ExpBur          :eebeeeeeeeebeebeeebeeeeeeeeeeeeeebeebbebbbebbebbbbeeebbbebbeeeebbebbbeebbbbbebbebebebbeeeeeebeeebebb:    

1twf_A_1     901:LLNTDHTLDPSLLESGSEILGDLKLQVLLDEEYKQLVKDRKFLREVFVDGEANWPLPVNIRRIIQNAQQTFHIDHTKPSDLTIKDIVLGVKDLQENLLVL:1000
SecStr          :TT TTTS  TTTBTTHHHHTT HHHHHHHHHHHHHHHHHHHHHHHHTTT   EEEEES HHHHHHHHHHHTT  TTS B   HHHHHHHHHHHHTT  S :    
ExpBur          :beeeeebbeeebbebbeebeeeeebbebbeebbeebeebbeebbeebeebebeeebbbbbebbbbbbeeeeebeeeeebebebeebbebbeebbeebebb:    

1twf_A_1    1001:RGKNEIIQNAQRDAVTLFCCLLRSRLATRRVLQEYRLTKQAFDWVLSNIEAQFLRSVVHPGEMVGVLAAQSIGEPATQMTLXXXXXXXXXXKKVTSGVPR:1100
SecStr          :   SHHHHHHHHHTTHHHHHHHHHHS HHHHHHTS   HHHHHHHHHHHHHHHHHHB  TT  HHHHHHHHHHHHHTT   ----------  S  HHHH:    
ExpBur          :eeeeeeeeeebeebbeebbbbbbbbbbbbbbbeebebeeebbeebbeebeebbeebbbeebeebbebbbbbbbbbbeebee----------eeebebbeb:    

1twf_A_1    1101:LKEILNVAKNMKTPSLTVYLEPGHAADQEQAKLIRSAIEHTTLKSVTIASEIYYDPDPRSTVIPEDEEIIQLHFSLXXXXXXXXXXQQSPWLLRLELDRA:1200
SecStr          :HHHHTTT SS SS EEEEEB SSSSS HHHHHHHHHHHS EEGGGTEEEEEEEE   SSS SSGGGHHHHHTSS  ----------   SEEEEEEE HH:    
ExpBur          :bebbbebeeebeeebbbbbbeeeebeeeebbeebbbebbebbbeebbeeeeeeebeeeeebebeebeebbeeeeee----------eebeebbbbebeee:    

1twf_A_1    1201:AMNDKDLTMGQVGERIKQTFKNDLFVIWSEDNDEKLIIRCRVVXXXXXXXXXXAEEDHMLKKIENTMLENITLRGVENIERVVMMKYDRKVPSPTGEYVK:1300
SecStr          :HHHHTT  HHHHHHHHHHHHGGGEEEEE  TTSSS EEEEEE ----------  TTHHHHHHHHHHHHH EEES TT   EEEEEEEEEEE TTSSEEE:    
ExpBur          :bbeebebebeebbeebeeebeeebebbbbeeeeeebbbbbbbe----------eeeeeebeebeeebbeebbbeebeebeebebeeeeeebebeebebee:    

1twf_A_1    1301:EPEWVLETDGVNLSEVMTVPGIDPTRIYTNSFIDIMEVLGIEAGRAALYKEVYNVIASDGSYVNYRHMALLVDVMTTQGGLTSVTRHGFNRSNTGALMRC:1400
SecStr          :EEEEEEEEES  HHHHTTSTTB TTT B S HHHHHHHH HHHHHHHHHHHHHHHHHTTT    HHHHHHHHHHTTTTSS   SSS SSS SS  TTSS :    
ExpBur          :eebbbbebebbbbeebeebeebbeeebbbbbbbebbeeeeeeebbebbbebbeebbeeeeeebbebbbbbbbbebbeeeebebbbeeeeeeeeebbebeb:    

1twf_A_1    1401:SFEETVEILFEAGASAELDDCRGVSENVILGQMAPIGTGAFDVMIDEESL--------------------------------------------------:1450
SecStr          : SS SHHHHHHHHHHT EE   SHHHHHHTT   SSGGGSS     S  -:    
ExpBur          :eeeebbebeeebbbbbbebebebebbbeeeeeebeeeebeeeeeeeeee-:    


Input Residue Numbers for Focused Sites

ex) 2,15,123