Protein Model on 5mfd assembly_id=3
(TEMPLATE: 
5mfd
assembly_id:3
)Protein Model on 5mfd assembly_id=3
(TEMPLATE: 5mfd
assembly_id:3
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| MOLECULES | contact sites | |||||
| model | mark | query | asym_id oper (auth_asym_id) |
type | description | a(query A) |
| 1 | a | A(IMA1_HUMAN) | E 1 (E) | polymer(polypeptide(L)) [323 aa] | YIIIM''6AII | |
| 2 | b | F 1 (F) | polymer(polypeptide(L)) [105 aa] | Capsid decoration protein,pD_(KR)5 :DECO_LAMBD | 142W(R) 149S 151T(G) 184W 188N 191G(S) 231W 235N 270D(E) 273W 277Y(N) 315R(W) 354E 357W 364A(S) 395K(Q) 399W (identity: 52.9 %/39.4 %) | |
| 3 | c | V 1 (E) | non-polymer(CA) | CALCIUM ION | 174P 176A(E) (identity: 50.0 %/39.4 %) | |
| 4 | d | W 1 (E) | non-polymer(CA) | CALCIUM ION | 216P 218M(E) (identity: 50.0 %/39.4 %) | |
| 5 | e | X 1 (E) | non-polymer(CA) | CALCIUM ION | 305S(P) 307L(E) (identity: 0.0 %/39.4 %) | |
| 6 | f | Y 1 (E) | non-polymer(CA) | CALCIUM ION | 389A(P) 391F(E) (identity: 0.0 %/39.4 %) | |
| 7 | g | Z 1 (E) | non-polymer(CA) | CALCIUM ION | 132D 134S(Q) (identity: 50.0 %/39.4 %) | |
| 8 | h | AA 1 (E) | non-polymer(CA) | CALCIUM ION | 322T(S) 323G 364A(S) (identity: 33.3 %/39.4 %) | |
| 9 | i | BA 1 (E) | non-polymer(CA) | CALCIUM ION | 263D(P) 265P(E) (identity: 0.0 %/39.4 %) | |
| 10 | j | CA 1 (E) | non-polymer(CA) | CALCIUM ION | 347P 349T(E) (identity: 50.0 %/39.4 %) | |
| 11 | k | DA 1 (E) | non-polymer(CA) | CALCIUM ION | 131T(P) 133C(Q) (identity: 0.0 %/39.4 %) | |
| 12 | l | EA 1 (F) | non-polymer(CA) | CALCIUM ION | ||
| ALIGNMENTS |
| MODEL[1] Protein A "queryA" TEMPLATE:5mfd_E_1 identity=39.4% |
queryA 121:IPKFVSFLGRTDCSPIQFESAWALTNIASGTSEQTKAVVDGGAIPAFISLLASPHAHISEQAVWALGNIAGDGSVFRDLVIKYGAVDPLLALLAVPDMSS: 220
: * * * * * * **** ** ** * ** ** ** ** * * * ***** * ** ** * ** * :
5mfd_E_1 6:LPQMVQQLNSPDQQELQ-SALRKLSQIASGGNEQIQAVIDAGALPALVQLLSSPNEQILQEALWTLGNIASGGNEQIQAVIDAGALPALVQLLSSPNEQ-: 103
SecStr :HHHHHHGGG S HHHHH-HHHHHHHHHTTSHHHHHHHHHHTT HHHHHHGGG S HHHHHHHHHHHHHHTTS HHHHHHHHHTTHHHHHHHGGG S HH-:
ExpBur :eeebbeebebeeeeebb-ebbeebbeebeeeeeebeebbebebbeebbebbebeeeebbbbbbebbbebbebbeebbbbbbeeebbebbbebbeeeeee-:
Contact : kgkg b b b c c b b b d d
queryA 221:LACGYLRNLTWTLSNLCR--NKNPAPPIDAVEQILPTLVRLLHHDDPEVLADTCWAISYLTDGPNERIGMVVKTGVVPQLVKLLGASELPIVTPALRAIG: 318
: * *** * * *** ** ** ** * * * ** * * * * ** ** * ** *:
5mfd_E_1 104:----ILQEALWTLGNIASGGNEQIQAVIDAG--ALPALVQLLSSPNEQILQEALWTLGNIASGGNEQIQAVIDAGALPALVQLLSSPNEQILQEALWTLG: 197
SecStr :----HHHHHHHHHHHHTTS HHHHHHHHHTT--HHHHHHHGGG S HHHHHHHHHHHHHHTTS HHHHHHHHHTTHHHHHHHGGG S HHHHHHHHHHHH:
ExpBur :----bbbbbbebbbbbbebeeebbbbbbeee--bbeebbebbeeeeeebbebbbebbbbbbebeeebbebbbeeebbebbbebbeeeeeebbebbbebbb:
Contact : b b i i b b b e e b
queryA 319:NIVTGTDEQTQVVIDAGALAVFPSLLTNPKTNIQKEATWTMSNITAGRQDQIQQVVNHGLVPFLVSVLSKADFKTQKEAVWAVTNYTSGGTVEQIVYLVH: 418
:** * ** * ******* ** * * ** ** ** * *** * * * ** ** ** * * *** ** :
5mfd_E_1 198:NIASGGNEQIQAVIDAGALPALVQLLSSPNEQILQEALWTLGNIASGGNEQIQAVIDAGALPALVQLLSSPNEQILQEALWTLGNIASGGN-EQKQAVKE: 296
SecStr :HHTTS HHHHHHHHTTTHHHHHHHGGG S HHHHHHHHHHHHHHTTS HHHHHHHHHTTHHHHHHHGGG S HHHHHHHHHHHHHHHTS H-HHHHHHHH:
ExpBur :bbbebbeebbeebbeeebbeebbebbeeeeeebbebbbebbbbbbebeeebbbbbbeeebbebbbebbebeeeebbebbbebbbbbbebee-ebbebbee:
Contact : hh j j b b b f f b b
Contact : h
queryA 419:CGIIEPLMNLLTAKDTKI: 436
: * * * * **:
5mfd_E_1 297:AGALEKLEQLQSHENEKI: 314
SecStr :TTHHHHHHHGGG SSHHH:
ExpBur :eebeeebeebeeeeeeeb:
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