Protein Model on 5mff assembly_id=2
(TEMPLATE: 
5mff
assembly_id:2
)Protein Model on 5mff assembly_id=2
(TEMPLATE: 5mff
assembly_id:2
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| MOLECULES | contact sites | |||||
| model | mark | query | asym_id oper (auth_asym_id) |
type | description | b(query A) |
| 1 | a | C 1 (C) | polymer(polypeptide(L)) [279 aa] | YIIIM5AII | 149S 150G 151T(G) 152S(N) 192D(G) 193G 194S(N) 239N 266E(Q) 280D(S) 308P(Q) 348K(N) 349T(E) 350N(Q) 390D(N) 391F(E) 392K (identity: 29.4 %/40.5 %) | |
| 2 | b | A(IMA1_HUMAN) | D 1 (D) | polymer(polypeptide(L)) [279 aa] | YIIIM5AII | |
| 3 | c | F 1 (F) | polymer(polypeptide(L)) [10 aa] | (RR)5 | 180E(Q) 181Q(E) 184W 227R(Q) 228N(E) 231W 269A(Q) 270D(E) 273W 312P(E) 315R(W) 354E 357W (identity: 38.5 %/40.5 %) | |
| 4 | d | L 1 (C) | non-polymer(EDO) | 1,2-ETHANEDIOL | ||
| 5 | e | M 1 (C) | non-polymer(EDO) | 1,2-ETHANEDIOL | ||
| 6 | f | N 1 (C) | non-polymer(EDO) | 1,2-ETHANEDIOL | ||
| 7 | g | O 1 (C) | non-polymer(EDO) | 1,2-ETHANEDIOL | 389A(E) 391F(E) (identity: 0.0 %/40.5 %) | |
| 8 | h | P 1 (D) | non-polymer(EDO) | 1,2-ETHANEDIOL | 263D(P) 264D(N) 265P(E) 266E(Q) (identity: 0.0 %/40.5 %) | |
| 9 | i | Q 1 (D) | non-polymer(EDO) | 1,2-ETHANEDIOL | 202K(D) (identity: 0.0 %/40.5 %) | |
| 10 | j | R 1 (D) | non-polymer(EDO) | 1,2-ETHANEDIOL | 311T(Q) (identity: 0.0 %/40.5 %) | |
| 11 | k | T 1 (F) | non-polymer(EDO) | 1,2-ETHANEDIOL | 238R(S) (identity: 0.0 %/40.5 %) | |
| ALIGNMENTS |
| MODEL[2] Protein A "queryA" TEMPLATE:5mff_D_1 identity=40.5% |
queryA 121:IPKFVSFLGRTDCSPIQFESAWALTNIASGTSEQTKAVVDGGAIPAFISLLASPHAHISEQAVWALGNIAGDGSVFRDLVIKYGAVDPLLALLAVPDMSS: 220
: * * * * * * **** ** ** * ** ** ** ** * * *** *** * ** ** * ** * :
5mff_D_1 6:LPQMVQQLNSPDQQELQ-SALRKLSQIASGGNEQIQAVIDAGALPALVQLLSSPNEQILQEALWALSNIASGGNEQIQAVIDAGALPALVQLLSSPNEQ-: 103
SecStr :HHHHHHHTTSSS HHHH-HHHHHHHHHTTS HHHHHHHHHTTHHHHHHHGGG SSSHHHHHHHHHHHHHTTS HHHHHHHHHTTHHHHHHHGGG S HH-:
ExpBur :beeebebbeeeeeeebb-ebbebbbebbeeeeeebeebbeeebbebbbebbebeeeebbebbbebbbbbbebeeebbbbbbeeebbebbbebbebeeee-:
Contact : aaaa cc c aaa i
queryA 221:LACGYLRNLTWTLSNLCR--NKNPAPPIDAVEQILPTLVRLLHHDDPEVLADTCWAISYLTDGPNERIGMVVKTGVVPQLVKLLGASELPIVTPALRAIG: 318
: * * *** * *** ** ** ** * ** * * ** * * * * ** ** * ** * :
5mff_D_1 104:----ILQEALWALSNIASGGNEQIQAVIDAG--ALPALVQLLSSPNEQILQEALWALSNIASGGNEQIQAVIDAGALPALVQLLSSPNEQILQEALWALS: 197
SecStr :----HHHHHHHHHHHHTTS HHHHHHHHHTT--HHHHHHHGGG S HHHHHHHHHHHHHHTTS HHHHHHHHHTTHHHHHHHGGG S HHHHHHHHHHHH:
ExpBur :----bbbbbbebbbbbbebeeebbebbbeee--bbebbbebbebeeeebbebbbebbbbbbebeeebbbbbbeeebbeebbebbebeeeebbebbbebbb:
Contact : cc c ka a hhha cc c a a jc c
Contact : h
queryA 319:NIVTGTDEQTQVVIDAGALAVFPSLLTNPKTNIQKEATWTMSNITAGRQDQIQQVVNHGLVPFLVSVLSKADFKTQKEA: 397
:** * ** * ******* ** * * ** * *** * * * * * * * * ****:
5mff_D_1 198:NIASGGNEQIQAVIDAGALPALVQLLSSPNEQILQEALWALSNIASGGNEQKQAVKEAGALEKLEQLQSHENEKIQKEA: 276
SecStr :HHTTS HHHHHHHHHTTHHHHHHHHTT SSHHHHHHHHHHHHHHHTS HHHHHHHHHTTHHHHHHHGGG SSHHHHHHH:
ExpBur :bbbebeeebbbbbbeeebbeebbebbebebeebbebbbebbbbbbebeeebeebbeeebbeeebeebeeeeeeebeebb:
Contact : aaa c c gaaa
Contact : g
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