Protein Model on 5mfi assembly_id=1
(TEMPLATE: 
5mfi
assembly_id:1
)Protein Model on 5mfi assembly_id=1
(TEMPLATE: 5mfi
assembly_id:1
)| CurrentView:HTML5 Change to:[JAVA] |
DOWNLOAD: [sequence-replaced 3D model]
[for PyMOL] [3D template] [Modeller script]
|
| MOLECULES | contact sites | |||||
| model | mark | query | asym_id oper (auth_asym_id) |
type | description | a(query A) |
| 1 | a | A(IMA1_HUMAN) | A 1 (A) | polymer(polypeptide(L)) [239 aa] | YIII(Dq.V2)4CqI | |
| 2 | b | B 1 (B) | polymer(polypeptide(L)) [240 aa] | YIII(Dq.V2)4CqI | 264D 266E(Q) 306E(S) 308P(E) 348K(S) 350N(E) 390D(S) 392K(E) 435K(E) (identity: 11.1 %/34.9 %) | |
| 3 | c | C 1 (C) | polymer(polypeptide(L)) [8 aa] | (KR)4 | 322T(S) 323G 324T(N) 325D(N) 328T(I) 361N 363T(A) 364A(S) 365G 366R(N) 367Q(N) 370I 396E 399W 403N 405T(A) 406S 407G 408G(N) 409T(N) 413I 442D(W) 446N 449Q(S) 455G 487A(N) (identity: 46.2 %/34.9 %) | |
| 4 | d | D 1 (D) | polymer(polypeptide(L)) [6 aa] | (KR)4 | 312P(E) 315R(W) 350N(E) 357W 392K(E) 396E (identity: 33.3 %/34.9 %) | |
| ALIGNMENTS |
| MODEL[1] Protein A "queryA" TEMPLATE:5mfi_A_1 identity=34.9% |
queryA 253:LPTLVRLLHHDDPEVLADTCWAISYLTDGPNERIGMVVKTGVVPQLVKLLGASELPIVTPALRAIGNIVTGTDEQTQVVIDAGALAVFPSLLTNPKTNIQ: 352
:** * * * * * * ** * * ***** * ** ** * ** * * **** ** :
5mfi_A_1 6:LPQMVQQLNSPDQQELQSALRKLSQIASGGNEQIQKLIEAGALSPLVKLLDDASEEVIQEAVWAIANIASGNNEQIQKLIEAGALSPLVKLLDDASEEVI: 105
SecStr :HHHHHHGGG S HHHHHHHHHHHHHHHTS HHHHHHHHHTT HHHHHHHHHH HHHHHHHHHHHHHHTTS HHHHHHHHHTT HHHHHHHHHHS HHHH:
ExpBur :beebbeebebeeeeebbebbeebbebbeeeeeebeebbeeebbeebbebbeeeeeebbbbbbebbbbbbebeeebbeebbeeebbebbbebbeebeeebb:
Contact : b b b b d d cccc c b b
Contact : d
queryA 353:KEATWTMSNITAGRQDQIQQVVNHGLVPFLVSVLSKADFKTQKEAVWAVTNYTSGGTVEQIVYLVHCGIIEPLMNLLTAKDTKIILVILDAISNIFQAAE: 452
: ** * ** * *** * ** * * ***** * ** *** * * ** ** * ** ** :
5mfi_A_1 106:QEAVWAIANIASGNNEQIQKLIEAGALSPLVKLLDDASEEVIQEAVWAIANIASGNN-EQIQKLIEAGALSPLVKLLDDASEEVIQEAVWAIANIAS---: 201
SecStr :HHHHHHHHHHHTS HHHHHHHHHTT HHHHHHHHHHS HHHHHHHHHHHHHHTTS H-HHHHHHHHTT HHHHHHHTT S HHHHHHHHHHHHHHHT---:
ExpBur :ebbbebbbbbbebeeebbeebbeeebbebbbebbeebeeebbeebbebbbbbbebee-ebbeebbeeebbebbbebbebebeebbebbbebbbbbbe---:
Contact : d c ccccc c b b c c c ccccc c b c c c
Contact : d d
queryA 453:KLGETEKLSIMIEECGGLDKIEALQNHENESVYKASLSLIEKYFS: 497
: * * ** * * ** ** * * * *:
5mfi_A_1 202:--GNNEQIQ-KLEEAGAEPALEKLQSSPNEEVQKNAQAALEALNS: 243
SecStr :--S HHHHH-HHHHTTHHHHHHHGGG S HHHHHHHHHHHHHHT :
ExpBur :--beeebbe-ebeeeebeebbeebeebeeeebeeebeebbebbee:
Contact : c c
|
[help]