Protein Model on 8c3d_A_1_B_1 (TEMPLATE: 8c3d )

CurrentView:HTML5 Change to:[JAVA] DOWNLOAD:
[sequence-replaced 3D model] [for PyMOL]
[3D template]
[Modeller script]

ALL MOLECULES IN THE BIOLOGICAL UNIT:
[assembly_id:1]

Window size :
[small] [medium] [large]

[help]


MOLECULES contact sites
model mark query asym_id oper
(auth_asym_id)
type description a(query A)
1 a A(CATL1_HUMAN) A 1 (A) polymer(polypeptide(L)) [215 aa] Cathepsin K :CATK_HUMAN
2 b B 1 (LIG) polymer(polypeptide(L)) [3 aa] 3-PYRIDIN-4-YL-2,4-DIHYDRO-INDENO[1,2-.C.]PYRAZOLE 132Q 136G 137S 138C 139W 176E(D) 179N(G) 180G 181G 182L(Y) 183M 248A 274M(L) 275D(N) 276H (identity: 66.7 %/60.3 %)
ALIGNMENTS
MODEL[1] Protein A "queryA" TEMPLATE:8c3d_A_1 identity=60.3%
queryA       114:APRSVDWREKGYVTPVKNQGQCGSCWAFSATGALEGQMFRKTGRLISLSEQNLVDCSGPQGNEGCNGGLMDYAFQYVQDNGGLDSEESYPYEATEESCKY: 213
                :** *** * ********************  ******   *** *  ** ******     * ** ** *  ****** * * ***  ***   **** *:
8c3d_A_1       1:APDSVDYRKKGYVTPVKNQGQCGSCWAFSSVGALEGQLKKKTGKLLNLSPQNLVDCVSE--NDGCGGGYMTNAFQYVQKNRGIDSEDAYPYVGQEESCMY:  98
SecStr          :  S EETTTTT      B TTS  HHHHHHHHHHHHHHHHHHS    B HHHHHHH TT--S GGG   HHHHHHHHHHHT EEBTTTS   SS      :    
ExpBur          :eeeebbbeeeebbbebeebeebebbbbbbbbbbbbbbbeeeeeeeeebbbbbbbbbbee--bebeeeeebbbbbebbeeeebbbbbeebebeeeeeeeeb:    
Contact         :                  b   bbbb                                    b  bbbbb                              

queryA       214:NPKYSVANDTGFVDIPK-QEKALMKAVATVGPISVAIDAGHESFLFYKEGIYFEPDCSSEDMDHGVLVVGYGFESTESDNNKYWLVKNSWGEEWGMGGYV: 312
                :**    *   *   **   ****  *** *** ******   ** **  * *    * *    * ** ****        ** *  ****** **  ** :
8c3d_A_1      99:NPTGKAAKCRGYREIPEGNEKALKRAVARVGPVSVAIDASLTSFQFYSKGVYYDESCNSDNLNHAVLAVGYGIQK----GNKHWIIKNSWGENWGNKGYI: 194
SecStr          : GGGEEE    EEE  TT HHHHHHHHHHT  EEEEE   SHHHHT  SSEE  TT  TT   EEEEEEEEEEET----TEEEEEEE SB TTSTBTTEE:    
ExpBur          :eeeeeebebebeeebeeeebebbeebbeebbbbbbbbbbebeebeebeeeebeeeebeeeeeebbbbbbbbbeee----eeebbbbbbbebeebeeebbb:    
Contact         :                                   b                         bbb                                    

queryA       313:KMAKDRRNHCGIASAASYPTV: 333
                : **    * ****  ** *  :
8c3d_A_1     195:LMARNKNNACGIANLASFPKM: 215
SecStr          :EEESSSSSGGGTTSS EEE  :    
ExpBur          :bbbbeeebbbbbbbebbbbee:    


Input Residue Numbers for Focused Sites

ex) 2,15,123