[pdbjlvh2]Protein Model on 6yyp_A_1_E

Protein Model on 6yyp_A_1_E_1 (TEMPLATE: 6yyp )

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ALL MOLECULES IN THE BIOLOGICAL UNIT:
[assembly_id:1]

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MOLECULES						contact sites
model	mark	query	asym_id oper (auth_asym_id)	type	description	a(query A)
1	a	A(CATL1_HUMAN)	A 1 (AAA)	polymer(polypeptide(L)) [220 aa]	Cathepsin S :CATS_HUMAN
2	b		E 1 (AAA)	non-polymer(Q1H)	1-(furan-2-ylmethyl)-5-(trifluoromethyl)benzimidazol-2-amine	181G 182L(F) 183M 248A(G) 274M(V) 275D(N) 276H 277G 327A(F) (identity: 44.4 %/57.0 %)

ALIGNMENTS

MODEL[1] Protein A "queryA" TEMPLATE:6yyp_A_1 identity=57.0%

queryA       115:PRSVDWREKGYVTPVKNQGQCGSCWAFSATGALEGQMFRKTGRLISLSEQNLVDCSGPQ-GNEGCNGGLMDYAFQYVQDNGGLDSEESYPYEATEESCKY: 213
                :* ******** ** ** ** **  ***** **** *   *** * *** *******    ** ***** *  ****  ** * **  **** *    * *:
6yyp_A_1       4:PDSVDWREKGCVTEVKYQGSCGAUWAFSAVGALEAQLKLKTGKLVSLSAQNLVDCSTEKYGNKGCNGGFMTTAFQYIIDNKGIDSDASYPYKAMDQKCQY: 103
SecStr          : S EEGGGGT      B TTSB HHHHHHHHHHHHHHHHHHS    B HHHHHHHS GGGT  TTB   HHHHHHHHHHHT EEBTTTS   SS      :    
ExpBur          :eeebbbeeeebbbebbebeebebbbbbbbbbbbbbbbeeeeeeeeebbbbbbbbbbeeebebebbeeeebbebbebbeeeebbbbeeebebeeeeeeeeb:    
Contact         :                                                                   bbb                              

queryA       214:NPKYSVANDTGFVDIP-KQEKALMKAVATVGPISVAIDAGHESFLFYKEGIYFEPDCSSEDMDHGVLVVGYGFESTESDNNKYWLVKNSWGEEWGMGGYV: 312
                :  **  *        *   *  *  ***  ** **  ** * **  *  * * ** *      *********          *********   *  ** :
6yyp_A_1     104:DSKYRAATCSKYTELPYGREDVLKEAVANKGPVSVGVDARHPSFFLYRSGVYYEPSC-TQNVNHGVLVVGYG----DLNGKEYWLVKNSWGHNFGEEGYI: 198
SecStr          : GGGEEE  SEEEE  TT HHHHHHHHHHT  EEEEE   SHHHHT  SSEE  TT - S   EEEEEEEEE----EETTEEEEEEE SB TTSTBTTEE:    
ExpBur          :eeeeeebebeeeeebeeeebebbeebbbeebbbbbbbbbebeebeebeeeebebeeb-eeeeebbbbbbbbb----eeeeeebbbbbbbebeebeeebbb:    
Contact         :                                   b                         bbbb                                   

queryA       313:KMAKDRRNHCGIASAASYPTV: 333
                : **    *******  ***  :
6yyp_A_1     199:RMARNKGNHCGIASFPSYPEI: 219
SecStr          :EEE SSSSGGGTTTS EEEE :    
ExpBur          :ebbbeeebbbbbbbebbbbeb:    
Contact         :              b

Protein Model on 6yyp_A_1_E_1 (TEMPLATE: 6yyp )

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