Protein Model on 6s5h assembly_id=1 (TEMPLATE: 6s5h assembly_id:1 )

CurrentView:JAVA Change to:[HTML5] DOWNLOAD:
[sequence-replaced 3D model] [for PyMOL]
[3D template]
[Modeller script]

Window size :
[small] [medium] [large]

[help]


MOLECULES contact sites
model mark query asym_id oper
(auth_asym_id)
type description a(query A)
1 a A(RAB7A_HUMAN) A 1 (A) polymer(polypeptide(L)) [175 aa] Ras-related protein Rab-38 :RAB38_HUMAN
2 b B 1 (A) non-polymer(GTP) GUANOSINE-5'-TRIPHOSPHATE 16D 17S(L) 18G 19V 20G 21K 22T 23S 33F 34S 35N(S) 37Y 39A 40T 65A 66G 125N 126K 128D 129L(Q) 155S 156A 157K (identity: 87.0 %/37.4 %)
3 c C 1 (A) non-polymer(EDO) 1,2-ETHANEDIOL 73L(M) 77F(Y) (identity: 0.0 %/37.4 %)
4 d D 1 (A) non-polymer(EDO) 1,2-ETHANEDIOL 32K(N) 33F 34S 38K(R) (identity: 50.0 %/37.4 %)
5 e E 1 (A) non-polymer(EDO) 1,2-ETHANEDIOL
6 f F 1 (A) non-polymer(EDO) 1,2-ETHANEDIOL 17S(L) 18G 92A(R) (identity: 33.3 %/37.4 %)
7 g G 1 (A) non-polymer(EDO) 1,2-ETHANEDIOL 45F (identity: 100.0 %/37.4 %)
8 h H 1 (A) non-polymer(EDO) 1,2-ETHANEDIOL 28Y 29V 31K(Q) 47T(L) 48K 49E(V) (identity: 50.0 %/37.4 %)
9 i I 1 (A) non-polymer(EDO) 1,2-ETHANEDIOL
10 j J 1 (A) non-polymer(EDO) 1,2-ETHANEDIOL 90V 124G(A) 137K(N) 139A(M) 153E (identity: 40.0 %/37.4 %)
11 k K 1 (A) non-polymer(EDO) 1,2-ETHANEDIOL 96F 97K(E) 100D(A) (identity: 33.3 %/37.4 %)
12 l L 1 (A) non-polymer(MG) MAGNESIUM ION 22T 40T 63D (identity: 100.0 %/37.4 %)
13 m M 1 (A) non-polymer(BR) BROMIDE ION 67Q (identity: 100.0 %/37.4 %)
14 n N 1 (A) non-polymer(BR) BROMIDE ION 94N(A) (identity: 0.0 %/37.4 %)
15 o O 1 (A) non-polymer(BR) BROMIDE ION 36Q(H) (identity: 0.0 %/37.4 %)
ALIGNMENTS
MODEL[1] Protein A "queryA" TEMPLATE:6s5h_A_1 identity=37.4%
queryA         4:RKKVLLKVIILGDSGVGKTSLMNQYVNKKFSNQYKATIGADFLTKEVMVD-DRLVTMQIWDTAGQERFQSLGVAFYRGADCCVLVFDVTAPNTFKTLDSW: 102
                : *  * *    ** ******    **   **  * **** **  *    *    *  * ** ******       ** *     ***** * **     *:
6s5h_A_1       6:HKEHLYKLLVIGDLGVGKTSIIKRYVHQNFSSHYRATIGVDFALKVLHWDPETVVRLQLWDIAGQERFGNMTRVYYREAMGAFIVFDVTRPATFEAVAKW: 105
SecStr          :SEEEEEEEEEE STTSSHHHHHHHHHHS   S      SEEEEEEEEEEETTEEEEEEEEEE TTGGGSS HHHHHTTEEEEEEEEETT HHHHHHHHHH:    
ExpBur          :eeebebbbbbbbbeebbbbebbebbbeeeeeeeeeebeebeebebebeeeeebbbebebbbbbbeeeeeeebeebbeebbbbbbbbbeeeeebeebbbeb:    
Contact         :            bbbbbbbb    hh hdbbbobdbb    g hhh              l bbm     c   c            j f n kk  k  
Contact         :             ff   l          dd     l                                                               

queryA       103:RDEFLIQASPRDPENFPFVVLGNKIDLENRQVATK--RAQAWCYSKNNIPYFETSAKEAINVEQAFQTIARNALKQE: 177
                :        *         * * ** *                *        ******* **   *        *  *:
6s5h_A_1     106:KNDLDSKLSLPNGKPVSVVLLANKCDQXXXXXXXNGLKMDQFCKEHGFVGWFETSAKENINIDEASRCLVKHILANE: 182
SecStr          :HHHHHHH   TTS   EEEEEEE TT ------- HHHHHHHHHHHT SEEEEEBTTTTBSHHHHHHHHHHHHHH  :    
ExpBur          :bebbeeebebeeeeebbbbbbbbeeee-------eeeebeebbeeeebebeeebbbeeeeebeebbeebbeebbeee:    
Contact         :                     jbb bb       j   j             j bbb                                           


Input Residue Numbers for Focused Sites

ex) 2,15,123