Protein Model on 5ez5 assembly_id=1 (TEMPLATE: 5ez5 assembly_id:1 )

CurrentView:JAVA Change to:[HTML5] DOWNLOAD:
[sequence-replaced 3D model] [for PyMOL]
[3D template]
[Modeller script]

Window size :
[small] [medium] [large]

[help]


MOLECULES contact sites
model mark query asym_id oper
(auth_asym_id)
type description a(query A)
1 a A(RAB7A_HUMAN) A 1 (A) polymer(polypeptide(L)) [168 aa] Ras-related protein Rab-11A :RB11A_HUMAN
2 b B 1 (B) polymer(polypeptide(L)) [168 aa] Ras-related protein Rab-11A :RB11A_HUMAN 35N(L) 69R 70F(Y) 129L 157K(L) (identity: 40.0 %/42.0 %)
3 c C 1 (A) non-polymer(MG) MAGNESIUM ION 22T(S) 40T 63D (identity: 66.7 %/42.0 %)
4 d D 1 (A) non-polymer(GTP) GUANOSINE-5'-TRIPHOSPHATE 16D 17S(V) 18G 19V 20G 21K 22T(S) 23S(N) 33F 34S(N) 35N(L) 37Y(S) 39A(S) 40T 64T 65A 66G 125N 126K 128D 129L 155S 156A 157K(L) (identity: 66.7 %/42.0 %)
5 e E 1 (B) non-polymer(MG) MAGNESIUM ION
6 f F 1 (B) non-polymer(GTP) GUANOSINE-5'-TRIPHOSPHATE
ALIGNMENTS
MODEL[1] Protein A "queryA" TEMPLATE:5ez5_A_1 identity=42.0%
queryA         8:LLKVIILGDSGVGKTSLMNQYVNKKFSNQYKATIGADFLTKEVMVDDRLVTMQIWDTAGQERFQSLGVAFYRGADCCVLVFDVTAPNTFKTLDSWRDEFL: 107
                :* **   ** ****  *        *    * ***  * *    **      **********      * ****    ** *     *      *  *  :
5ez5_A_1       4:LFKVVLIGDVGVGKSNLLSRFTRNEFNLESKSTIGVEFATRSIQVDGKTIKAQIWDTAGQERYRAITSAYYRGAVGALLVYDIAKHLTYENVERWLKELR: 103
SecStr          :EEEEEEE STTSSHHHHHHHHHH    TT     SEEEEEEEEEETTEEEEEEEEEE S  SSS   HHHHTT SEEEEEEETT HHHHHTHHHHHHHHH:    
ExpBur          :ebbbbbbbbeebbbebbbbbbbeeeeeeeeeebeeeeeeeeebebeeeebebbbbbbbbebeeeebeeebbeebebbbbbbbbeeeebbeebeebbebbe:    
Contact         :        ddddddcd         ddb d dc                      cddd  bb                                     
Contact         :              d            d    d                                                                   

queryA       108:IQASPRDPENFPFVVLGNKIDLEN-RQVATKRAQAWCYSKNNIPYFETSAKEAINVEQAFQTI: 169
                :  *      *      *** **   * * *  * *    **     ****    *** *****:
5ez5_A_1     104:DHADS----NIVIMLVGNKSDLRHLRAVPTDEARAFA-EKNGLSFIETSALDSTNVEAAFQTI: 161
SecStr          :HHS T----T EEEEEEE TT GGG  S HHHHHHHH-HHHT EEEE BTTTTBSHHHHHHHH:    
ExpBur          :eebee----ebbbbbbbbeeeeeeeeebeeeebeeeb-eeeebebbbbbbeeeeebeebbeeb:    
Contact         :                 dd db                          ddb                                                 
Contact         :                     d                            d                                                 


Input Residue Numbers for Focused Sites

ex) 2,15,123