Protein Model on 4phg_A_1_F_1 (TEMPLATE: 4phg )

CurrentView:HTML5 Change to:[JAVA] DOWNLOAD:
[sequence-replaced 3D model] [for PyMOL]
[3D template]
[Modeller script]

ALL MOLECULES IN THE BIOLOGICAL UNIT:
[assembly_id:1]

Window size :
[small] [medium] [large]

[help]


MOLECULES contact sites
model mark query asym_id oper
(auth_asym_id)
type description a(query A)
1 a A(RAB7A_HUMAN) A 1 (A) polymer(polypeptide(L)) [176 aa] GTP-binding protein YPT7 :YPT7_YEAST
2 b F 1 (A) non-polymer(YT3) YTTRIUM (III) ION
ALIGNMENTS
MODEL[1] Protein A "queryA" TEMPLATE:4phg_A_1 identity=68.4%
queryA         6:KVLLKVIILGDSGVGKTSLMNQYVNKKFSNQYKATIGADFLTKEVMVD-DRLVTMQIWDTAGQERFQSLGVAFYRGADCCVLVFDVTAPNTFKTLDSWRD: 104
                :*  *****************  *** * * ** ************ ** *   *** ***** ******************** ***    *    ****:
4phg_A_1       8:KNILKVIILGDSGVGKTSLMHRYVNDKYSCQYIATIGADFLTKEVTVDGDKVATMQVWDTAGLERFQSLGVAFYRGADCCVLVYDVTNASSFENIKSWRD: 107
SecStr          : EEEEEEEEE TTSSHHHHHHHHHH    SS     SEEEEEEEEEETTTEEEEEEEEEE SSGGG TTGGGGTTT SEEEEEEETT HHHHHTHHHHHH:    
ExpBur          :eeebbbbbbbbeebbbbebbebbbeeeeeeeeeeeeeeeeeeeebebeeeeebebebbbbbbeeeebeeeeebbeebbbbbbbbbbeeeebbeebeebbe:    

queryA       105:EFLIQASPRDPENFPFVVLGNKIDLENRQ--VATKRAQAWCYSKNNIPYFETSAKEAINVEQAFQTIARNALKQ: 176
                :***  *    ** **** ****** *     *  * **    *   ** * **** ****  **  *** ** *:
4phg_A_1     108:EFLVHANVNSPETFPFVILGNKIDAEESKKIVSEKSAQELAKSLGDIPLFLTSAKNAINVDTAFEEIARSALQQ: 181
SecStr          :HHHHHTT S TTTS EEEEEE TTS TTT  S HHHHHHHHHHTTS  EEEEBTTTTBSHHHHHHHHHHHHHHH:    
ExpBur          :ebbeeeebeeeeebbbbbbbbeeebeeeeeebeeeebeebbeebeebeebbbbbeeeeebeebbeebbebbbee:    


Input Residue Numbers for Focused Sites

ex) 2,15,123