Protein Model on 2hv8_A_1_B_2 (TEMPLATE: 2hv8 )

CurrentView:HTML5 Change to:[JAVA] DOWNLOAD:
[sequence-replaced 3D model] [for PyMOL]
[3D template]
[Modeller script]

ALL MOLECULES IN THE BIOLOGICAL UNIT:
[assembly_id:1]

Window size :
[small] [medium] [large]

[help]


MOLECULES contact sites
model mark query asym_id oper
(auth_asym_id)
type description a(query A)
1 a A(RAB7A_HUMAN) A 1 (A) polymer(polypeptide(L)) [169 aa] Ras-related protein Rab-11A :RB11A_HUMAN
2 b B 2 (D) polymer(polypeptide(L)) [54 aa] Rab11 family-interacting protein 3 :RFIP3_HUMAN 38K 39A(S) 41I (identity: 66.7 %/42.0 %)
ALIGNMENTS
MODEL[1] Protein A "queryA" TEMPLATE:2hv8_A_1 identity=42.0%
queryA         8:LLKVIILGDSGVGKTSLMNQYVNKKFSNQYKATIGADFLTKEVMVDDRLVTMQIWDTAGQERFQSLGVAFYRGADCCVLVFDVTAPNTFKTLDSWRDEFL: 107
                :* **   *******  *        *    * ***  * *    **      ******* **      * ****    ** *     *      *  *  :
2hv8_A_1       8:LFKVVLIGDSGVGKSNLLSRFTRNEFNLESKSTIGVEFATRSIQVDGKTIKAQIWDTAGLERYRAITSAYYRGAVGALLVYDIAKHLTYENVERWLKELR: 107
SecStr          :EEEEEEESSTTSSHHHHHHHHHHS   TT     SEEEEEEEEEETTEEEEEEEEEE    S  TTHHHHHTT  EEEEEEETT HHHHHTHHHHHHHHH:    
ExpBur          :ebbbbbbbbeebbbebbbbbbbeeeeeeeeeebeeeeeeeeebebeeeebebbbebbbbeeeebeebeebbeebebbbbbbbbebeebbeebeebbebbe:    
Contact         :                              bb b                                                                  

queryA       108:IQASPRDPENFPFVVLGNKIDLEN-RQVATKRAQAWCYSKNNIPYFETSAKEAINVEQAFQTI: 169
                :  *      *      *** **   * * *  * *    **     ****    *** *****:
2hv8_A_1     108:DHADS----NIVIMLVGNKSDLRHLRAVPTDEARAFA-EKNGLSFIETSALDSTNVEAAFQTI: 165
SecStr          :HHS T----T EEEEEEE TT TTT  S HHHHHHHH-HHTT EEEE  TTT TTHHHHHHHH:    
ExpBur          :eebee----ebbbbbbbbeeeeeeeeebeeeebeeeb-eeeebeebbbbbeeeeebeebbeeb:    


Input Residue Numbers for Focused Sites

ex) 2,15,123