Protein Model on 1tu4 assembly_id=6 (TEMPLATE: 1tu4 assembly_id:6 )

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MOLECULES contact sites
model mark query asym_id oper
(auth_asym_id)
type description a(query A)
1 a A(RAB7A_HUMAN) A 1 (A) polymer(polypeptide(L)) [169 aa] Ras-related protein Rab-5A :RAB5A_HUMAN
2 b B 1 (B) polymer(polypeptide(L)) [162 aa] Ras-related protein Rab-5A :RAB5A_HUMAN 41I 42G 43A 44D(A) 45F 65A 67Q 69R 70F(Y) 71Q(H) 72S 73L 74G(A) 75V(P) 76A(U) (identity: 60.0 %/43.7 %)
3 c C 1 (C) polymer(polypeptide(L)) [169 aa] Ras-related protein Rab-5A :RAB5A_HUMAN
4 d D 1 (D) polymer(polypeptide(L)) [164 aa] Ras-related protein Rab-5A :RAB5A_HUMAN 37Y(Q) 38K(E) 39A(S) 40T 42G 43A 65A 66G (identity: 62.5 %/43.7 %)
5 e E 1 (A) non-polymer(CO) COBALT (II) ION 22T(S) (identity: 0.0 %/43.7 %)
6 f F 1 (A) non-polymer(GDP) GUANOSINE-5'-DIPHOSPHATE 16D(E) 18G(A) 19V 20G 21K 22T(S) 23S 125N 126K 128D 129L 155S 156A 157K (identity: 78.6 %/43.7 %)
7 g G 1 (B) non-polymer(CO) COBALT (II) ION
8 h H 1 (B) non-polymer(CO) COBALT (II) ION 70F(Y) 71Q(H) (identity: 0.0 %/43.7 %)
9 i I 1 (B) non-polymer(SO4) SULFATE ION
10 j J 1 (B) non-polymer(SO4) SULFATE ION
11 k K 1 (B) non-polymer(GDP) GUANOSINE-5'-DIPHOSPHATE
12 l L 1 (C) non-polymer(CO) COBALT (II) ION
13 m M 1 (C) non-polymer(GDP) GUANOSINE-5'-DIPHOSPHATE
14 n N 1 (D) non-polymer(CO) COBALT (II) ION
15 o O 1 (D) non-polymer(CO) COBALT (II) ION
16 p P 1 (D) non-polymer(SO4) SULFATE ION
17 q Q 1 (D) non-polymer(SO4) SULFATE ION
18 r R 1 (D) non-polymer(SO4) SULFATE ION 69R (identity: 100.0 %/43.7 %)
19 s S 1 (D) non-polymer(SO4) SULFATE ION
20 t T 1 (D) non-polymer(GDP) GUANOSINE-5'-DIPHOSPHATE
ALIGNMENTS
MODEL[1] Protein A "queryA" TEMPLATE:1tu4_A_1 identity=43.7%
queryA         9:LKVIILGDSGVGKTSLMNQYVNKKFSNQYKATIGADFLTKEVMVDDRLVTMQIWDTAGQERFQSLGVAFYRGADCCVLVFDVTAPNTFKTLDSWRDEFLI: 108
                : *   ** * *** **    *   *      **** ***  *  **  *   *********  **    ****     * * *    *     *  *   :
1tu4_A_1       8:FKLVLLGESAVGKSSLVLRFVKGQFHEFQESTIGAAFLTQTVCLDDTTVKFEIWDTAGQERYHSLAPUYYRGAQAAIVVYDITNEESFARAKNWVKELQR: 107
SecStr          :EEEEEE STTSSHHHHHHHHHHTS B   EE GGG EEEEEEE TTSSEEEEEEEESSGGGTS   HHHHTTEEEEEEEEETT HHHHHHHHHHHHHHHH:    
ExpBur          :bbbbbbbeeebbbeebbeebbeebeeeeeeeeeeeebebbbbebeeeebebebbbbeeebeeeebeeebbeebebbbbbbbbeeeebbeebeebbeebee:    
Contact         :       f ffffef             ddddbbbbb                   bdb bbbbbbbb                                
Contact         :             f                   dd                     d   rhh                                     

queryA       109:QASPRDPENFPFVVLGNKIDLEN-RQVATKRAQAWCYSKNNIPYFETSAKEAINVEQAFQTIAR: 171
                :****    *      *** ** * * *    **      *     *****   **   *  ** :
1tu4_A_1     108:QASP----NIVIALSGNKADLANKRAVDFQEAQSYA-DDNSLLFUETSAKTSUNVNEIFUAIAK: 166
SecStr          :HS T----T EEEEEEE TT GGG  S HHHHHHHH-HHTT EEEE  TTT TTHHHHHHHHHH:    
ExpBur          :ebee----ebbbbbbbbebeeeeeeebeeeebbebb-eeeebbbebbbbeeeeebeebbeebbe:    
Contact         :                ff ff                          fff                                                  


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