Protein Model on 1g16 assembly_id=1 (TEMPLATE: 1g16 assembly_id:1 )

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MOLECULES contact sites
model mark query asym_id oper
(auth_asym_id)
type description d(query A)
1 a A 1 (A) polymer(polypeptide(L)) [159 aa] RAS-RELATED PROTEIN SEC4 :SEC4_YEAST
2 b B 1 (B) polymer(polypeptide(L)) [161 aa] RAS-RELATED PROTEIN SEC4 :SEC4_YEAST 53D(N) 54D(G) (identity: 0.0 %/37.1 %)
3 c C 1 (C) polymer(polypeptide(L)) [167 aa] RAS-RELATED PROTEIN SEC4 :SEC4_YEAST 148N(G) 150P 151Y(F) 152F(I) 153E 161N 164Q(E) 167Q(F) 168T 171R(K) (identity: 40.0 %/37.1 %)
4 d A(RAB7A_HUMAN) D 1 (D) polymer(polypeptide(L)) [160 aa] RAS-RELATED PROTEIN SEC4 :SEC4_YEAST
5 e E 1 (A) non-polymer(CO) COBALT (II) ION
6 f F 1 (A) non-polymer(CO) COBALT (II) ION
7 g G 1 (A) non-polymer(GDP) GUANOSINE-5'-DIPHOSPHATE
8 h H 1 (B) non-polymer(CO) COBALT (II) ION
9 i I 1 (B) non-polymer(GDP) GUANOSINE-5'-DIPHOSPHATE
10 j J 1 (C) non-polymer(CO) COBALT (II) ION
11 k K 1 (C) non-polymer(CO) COBALT (II) ION
12 l L 1 (C) non-polymer(GDP) GUANOSINE-5'-DIPHOSPHATE
13 m M 1 (D) non-polymer(CO) COBALT (II) ION 22T(S) 63D (identity: 50.0 %/37.1 %)
14 n N 1 (D) non-polymer(CO) COBALT (II) ION 31K(D) 159A(D) 163E(N) (identity: 0.0 %/37.1 %)
15 o O 1 (D) non-polymer(CO) COBALT (II) ION 113R(H) (identity: 0.0 %/37.1 %)
16 p P 1 (D) non-polymer(GDP) GUANOSINE-5'-DIPHOSPHATE 16D 17S 18G 19V 20G 21K 22T(S) 23S(C) 33F 35N(P) 125N 126K 128D 129L(U) 155S 156A 157K (identity: 76.5 %/37.1 %)
ALIGNMENTS
MODEL[4] Protein A "queryA" TEMPLATE:1g16_D_1 identity=37.1%
queryA         8:LLKVIILGDSGVGKTSLMNQYVNKKFSNQYKATIGADFLTKEVMVDDRLVTMQIWDTAGQERFQSLGVAFYRGADCCVLVFDVTAPNTFKTLDSWRDEFL: 107
                :  *    *******  *    *  **          **  * *      *  ***********     * ****    ** * *   **     *     :
1g16_D_1       3:IUKILLIGDSGVGKSCLLVRFVEDKFNPXXXXXXXIDFKIKTVDINGKKVKLQIWDTAGQERFRTITTAYYRGAUGIILVYDITDERTFTNIKQW----F:  98
SecStr          : EEEEEES TTSSHHHHHHHHHH     -------  EEEEEEEETTEEEEEEEE   GGGGGGTTSTTTTTT  EEEEEEETT HHHHHTHHHH----H:    
ExpBur          :ebbbbbbbbeebbbeebbebbeeeeeee-------ebeeeeebebeeeebebebbbbeeeeeeebeeeebbeebebbbbbbbbeeeebbeebeeb----e:    
Contact         :        ppppppmp       n p p                 bb        m                                            
Contact         :              p                                                                                     

queryA       108:IQASPRDPENFPFVVLGNKIDLENRQVATKRAQAWCYSKNNIPYFETSAKEAINVEQAFQTIAR: 171
                :                *** * * * *      *       **  * ***   **   * * * :
1g16_D_1      99:KTVNEHANDEAQLLLVGNKSDUETRVVTADQGEALA-KELGIPFIESSAKNDDNVNEIFFTLAK: 161
SecStr          :HHHHHHS TT EEEEEEE TT TT  S HHHHHHHH-HHHT  EEE BTTTTBSHHHHHHHHHH:    
ExpBur          :ebbeeebeeebbbbbbbbeeeeeeeebeeeebeebb-eebebebbbbbbeeeeebeebbeebbe:    
Contact         :     o           pp pp                  c cccc ppp n c nc  cc  c                                    


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