#rank pdb_id asym_id(protein) oper_expression(prot) auth_asym_id(prot) comp_id(comp) asym_id(comp) oper_expression(comp) auth_asym_id(comp) auth_seq_id(comp) cluster95(prot) cluster40(prot) clusterE4(prot) uniprot_id(prot) nresidue(prot) pdbx_description(prot) seq_id_aa_contact(prot) 1 6xcz A 1 A ROC B 1 A 401 73371 73371 73371 PEPA_PIG 326 Pepsin A 32D:34G:35S:73I:74T:75Y:76G:77T:111F:112L:117F:128I:189Y:215D:217G:218T:287E:291V:300I 2 3pww A 1 A ROC B 1 A 1001 73923 73923 73923 CARP_CRYPA 330 Endothiapepsin 10I:15D:33D:35D:37G:38S:77I:78S:79Y:80G:81D:83S:116F:125L:194F:217I:219D:221G:222T:223T:226Y:304I 3 3r0y A 1 A RSZ C 1 A 301 24188 24188 24188 Q000H7_9HIV1 99 Multidrug-resistant clinical isolate 769 HIV-1 Protease 25N:27G:50I:80T:81P:82T:84V 3 3r0y B 1 B RSZ C 1 A 301 24188 24188 24188 Q000H7_9HIV1 99 Multidrug-resistant clinical isolate 769 HIV-1 Protease 25N:27G:47I:48G:80T:81P:82T 4 1c6z A 1 A ROC C 1 B 505 24408 24408 24408 O09893_9HIV1 99 PROTEIN (PROTEASE) 8R:25D:28A:30D:32V:47I:48G:81P:82T:84I 4 1c6z B 1 B ROC C 1 B 505 24408 24408 24408 O09893_9HIV1 99 PROTEIN (PROTEASE) 25D:27G:28A:29D:30D:47I:48G:49G:50I:80T:81P:84I 5 6xhn A 1 A V3D C 1 A 9001 69082 69082 69082 R1A_CVHSA 301 3C-like proteinase 42H:141F:142L:143N:144G:145S:146C:164H:165H:166M:167E:169P:173H:188D:190Q:191T:192A 5 6xhn B 1 B V3D E 1 B 9001 69082 69082 69082 R1A_CVHSA 300 3C-like proteinase 42H:50M:141F:142L:143N:144G:145S:146C:164H:165H:166M:167E:169P:173H:189R:190Q:191T:192A 6 7uff A 1 A NYF E 1 A 603 88822 88822 88822 CP3A4_HUMAN 455 Cytochrome P450 3A4 37F:56D:85R:86R:88F:99S:100I:191L:193F:204T:221F:281I:284F:285A:289T 6 7uff B 2 B NYF G 2 B 602 88822 88822 88822 CP3A4_HUMAN 444 Cytochrome P450 3A4 37F:56D:86R:88F:99S:100I:204T:221F:281I:284F:285A:289T 7 3ufn A 1 A ROC C 1 A 401 24333 24333 24333 POL_HV1BR 99 HIV-1 protease 25D:27G:28A:29D:30N:47V:48G:49G:50I:80T:81P 7 3ufn A 1 A ROC D 1 A 402 24333 24333 24333 POL_HV1BR 99 HIV-1 protease 8R:10F:23L:81P:82V 7 3ufn B 1 B ROC C 1 A 401 24333 24333 24333 POL_HV1BR 99 HIV-1 protease 8R:25D:27G:30N:47V:48G:49G:50I:82V:84V 7 3ufn B 1 B ROC D 1 A 402 24333 24333 24333 POL_HV1BR 99 HIV-1 protease 27G:29D 8 2r5q A 1 A 1UN E 1 B 900 24371 24371 24371 Q50CM2_9HIV1 99 Protease 8R:23L:25D:27G:30D:47I:48G:49G:50I:81P:82V:84I 8 2r5q B 1 B 1UN E 1 B 900 24371 24371 24371 Q50CM2_9HIV1 99 Protease 25D:27G:28A:29D:30D:47I:48G:49G:50I:81P:82V:84I 8 2r5q C 1 C 1UN F 1 D 900 24371 24371 24371 Q50CM2_9HIV1 99 Protease 8R:23L:25D:27G:30D:47I:48G:49G:50I:81P:82V:84I 8 2r5q D 1 D 1UN F 1 D 900 24371 24371 24371 Q50CM2_9HIV1 99 Protease 25D:27G:28A:29D:30D:47I:48G:49G:50I:81P:84I 9 1ida A 1 A 0PO C 1 B 100 24459 24459 24459 POL_HV2RO 99 Protease 8R:23L:25D:27G:30D:47V:48G:49G:50I:81P:82I:84I 9 1ida B 1 B 0PO C 1 B 100 24459 24459 24459 POL_HV2RO 99 Protease 25D:27G:28A:29D:47V:48G:49G:50I:81P:82I:84I 9 1idb A 1 A 0DO C 1 B 100 24459 24459 24459 Q9W9R3_9HIV2 99 Protease 25D:27G:30D:32I:47V:48G:49G:50I:81P:82I:84I 9 1idb B 1 B 0DO C 1 B 100 24459 24459 24459 Q9W9R3_9HIV2 99 Protease 25D:27G:28A:29D:30D:32I:47V:48G:49G:50I:81P:82I:84I 10 3n3i A 1 A ROC B 1 A 201 49063 49063 49063 POL_HV1H2 198 Protease 25D:27G:28A:29D:30D:47I:48V:49G:50I:81P:82V:112R:129D:131G:132A:134D:151I:152V:153G:154I:186V 10 4q5m A 1 A ROC B 1 A 1101 49063 49063 49063 POL_HV1H2 198 Protease 8R:25D:27G:28A:30N:32V:48G:49G:50I:81P:82V:84I:129D:131G:132A:133D:134N:151I:152G:153G:154I:184T:185P:186V:188I 10 7dt9 A 1 A ROC B 1 A 1101 49063 49063 49063 Q72874_9HIV1 198 Protease 25D:27G:28A:29D:30N:47I:48G:49G:50I:80T:81P:82V:84I:129D:131G:132A:134N:136V:151I:152G:153G:154I:186V:188I 10 7doz A 1 A 1UN B 1 A 1101 49063 49063 49063 Q72874_9HIV1 198 Protease 8R:23L:25D:27G:28A:30N:32V:47I:48G:49G:50I:82V:84I:129D:131G:132A:133D:134N:153G:154I:185P:188I 11 1fb7 A 1 A ROC B 1 A 100 23289 23289 23289 Q72874_9HIV1 99 HIV-1 PROTEASE 25D:27G:28A:29D:30D:48V:49G:50I:80T:81P:82V:84I 11 1fb7 A 1 A ROC B 2 A 100 23289 23289 23289 Q72874_9HIV1 99 HIV-1 PROTEASE 8R:25D:27G:47I:48V:49G:50I:81P:82V:84I 11 1fb7 A 2 A ROC B 1 A 100 23289 23289 23289 Q72874_9HIV1 99 HIV-1 PROTEASE 8R:25D:27G:47I:48V:49G:50I:81P:82V:84I 11 1fb7 A 2 A ROC B 2 A 100 23289 23289 23289 Q72874_9HIV1 99 HIV-1 PROTEASE 25D:27G:28A:29D:30D:48V:49G:50I:80T:81P:82V:84I 11 1hxb A 1 A ROC C 1 A 100 23289 23289 23289 POL_HV1H2 99 HIV-1 PROTEASE 25D:27G:28A:29D:30D:47I:48G:49G:50I:80T:81P:82V:84I 11 1hxb B 1 B ROC C 1 A 100 23289 23289 23289 POL_HV1H2 99 HIV-1 PROTEASE 8R:23L:25D:27G:28A:29D:30D:32V:47I:48G:49G:50I:81P:82V:84I 11 2nmy A 1 A ROC F 1 A 401 23289 23289 23289 POL_HV1B5 99 PROTEASE 25D:27G:28A:29D:30D:47I:48G:49G:50I:80T:81P:84I 11 2nmy B 1 B ROC F 1 A 401 23289 23289 23289 POL_HV1B5 99 PROTEASE 8R:23L:25D:27G:47I:48G:49G:50I:81P:84I 11 2nmz A 1 A ROC F 1 B 401 23289 23289 23289 POL_HV1B5 99 PROTEASE 25D:27G:28A:29D:30D:47I:48G:49G:50I:80T:81P 11 2nmz B 1 B ROC F 1 B 401 23289 23289 23289 POL_HV1B5 99 PROTEASE 8R:23L:25D:27G:28A:30D:47I:48G:49G:50I:82A:84I 11 2nnk A 1 A ROC E 1 A 401 23289 23289 23289 POL_HV1B5 99 PROTEASE 25D:27G:28A:29D:30D:47I:48G:49G:50I:80T:81P:84V 11 2nnk B 1 B ROC E 1 A 401 23289 23289 23289 POL_HV1B5 99 PROTEASE 8R:23L:25D:27G:47I:48G:49G:50I:81P:82V 11 2nnp A 1 A ROC C 1 A 401 23289 23289 23289 POL_HV1B5 99 PROTEASE 25D:27G:28A:29D:30D:47I:48G:49G:50I:80T:81P:82V 11 2nnp B 1 B ROC C 1 A 401 23289 23289 23289 POL_HV1B5 99 PROTEASE 8R:23L:25D:27G:28A:30D:32V:47I:48G:49G:50I:81P:82V:84V 11 3cyx A 1 A ROC C 1 A 201 23289 23289 23289 POL_HV1B5 99 HIV-1 Protease 25D:27G:28A:29D:30D:47I:48G:49G:50V:80T:81P:82V:84I 11 3cyx B 1 B ROC C 1 A 201 23289 23289 23289 POL_HV1B5 99 HIV-1 Protease 8R:23L:25D:27G:30D:32V:47I:48G:49G:50V:81P:82V:84I 11 3d1x A 1 A ROC D 1 A 201 23289 23289 23289 POL_HV1B5 99 HIV-1 Protease 25D:27G:28A:29D:30D:47I:48G:49G:50I:80T:81P:82V:84I 11 3d1x B 1 B ROC D 1 A 201 23289 23289 23289 POL_HV1B5 99 HIV-1 Protease 8R:23L:25D:27G:47I:48G:49G:50I:81P:82V:84I 11 3d1y A 1 A ROC E 1 A 201 23289 23289 23289 POL_HV1B5 99 HIV-1 Protease 25D:27G:28A:29D:30D:47I:48G:49G:50I:80T:81P:82V:84I 11 3d1y B 1 B ROC E 1 A 201 23289 23289 23289 POL_HV1B5 99 HIV-1 Protease 8R:23L:25D:27G:47I:48G:49G:50I:81P:84I 11 3ekq A 1 A ROC C 1 A 100 23289 23289 23289 POL_HV1A2 99 Protease 25D:27G:28A:29D:30D:47I:48V:49G:50I:80T:81P:82T:84I 11 3ekq B 1 B ROC C 1 A 100 23289 23289 23289 POL_HV1A2 99 Protease 8R:23L:25D:27G:30D:32V:47I:48V:49G:50I:81P:84I 11 3el4 A 1 A ROC C 1 A 100 23289 23289 23289 POL_HV1A2 99 Protease 25D:27G:28A:29D:30D:47I:48G:49G:50I:80T:81P:82T:84V 11 3el4 B 1 B ROC C 1 A 100 23289 23289 23289 POL_HV1A2 99 Protease 8R:25D:27G:28A:30D:32V:47I:48G:49G:50I:81P:82T 11 3k4v A 1 A ROC G 1 B 201 23289 23289 23289 POL_HV1B1 100 HIV-1 Protease 24L:26D:28G:29A:30D:31D:49G:50G:51I:81T:82P:83V:85I 11 3k4v B 1 B ROC G 1 B 201 23289 23289 23289 POL_HV1B1 100 HIV-1 Protease 24L:26D:28G:29A:31D:33V:48I:49G:50G:51I:82P:83V:85I 11 3k4v C 1 C ROC J 1 D 201 23289 23289 23289 POL_HV1B1 99 HIV-1 Protease 8R:23L:25D:27G:30D:32V:47I:48G:49G:50I:81P:82V:84I 11 3k4v D 1 D ROC J 1 D 201 23289 23289 23289 POL_HV1B1 99 HIV-1 Protease 25D:27G:28A:29D:30D:47I:48G:49G:50I:80T:81P:82V:84I 11 3ndt A 1 A ROC E 1 A 101 23289 23289 23289 POL_HV1B1 100 Protease 24L:26D:28G:29A:30D:31D:49G:50G:51I:81T:82P:83V:85I 11 3ndt B 1 B ROC E 1 A 101 23289 23289 23289 POL_HV1B1 100 Protease 24L:26D:28G:29A:31D:49G:50G:51I:82P:83V:85I 11 3ndt C 1 C ROC S 1 D 100 23289 23289 23289 POL_HV1B1 99 Protease 9R:24L:26D:28G:29A:31D:49G:50G:51I:82P:83V:85I 11 3ndt D 1 D ROC S 1 D 100 23289 23289 23289 POL_HV1B1 99 Protease 26D:28G:29A:30D:31D:49G:50G:51I:81T:82P:85I 11 3ndu A 1 A ROC E 1 A 101 23289 23289 23289 Q7SSI0_9HIV1 100 Protease 24L:26D:28G:29A:30D:31D:48I:49G:50G:51I:81T:82P:83V:85I 11 3ndu B 1 B ROC E 1 A 101 23289 23289 23289 Q7SSI0_9HIV1 100 Protease 24L:26D:28G:29A:31D:49G:50G:51I:82P:85I 11 3ndu C 1 C ROC Z 1 D 100 23289 23289 23289 Q7SSI0_9HIV1 99 Protease 9R:24L:26D:28G:31D:33V:49G:50G:51I:82P:83V:85I 11 3ndu D 1 D ROC Z 1 D 100 23289 23289 23289 Q7SSI0_9HIV1 99 Protease 26D:28G:29A:30D:31D:48I:49G:50G:51I:81T:82P:83V:85I 11 3oxc A 1 A ROC C 1 A 401 23289 23289 23289 Q7SSI0_9HIV1 99 Protease 25D:27G:28A:29D:30D:47I:48G:49G:50I:80T:81P:84I 11 3oxc B 1 B ROC C 1 A 401 23289 23289 23289 Q7SSI0_9HIV1 99 Protease 8R:23L:25D:27G:28A:30D:48G:49G:50I:81P:82V:84I 11 3pwr A 1 A ROC C 1 A 401 23289 23289 23289 POL_HV1BR 99 Protease 23L:25D:27G:28A:29D:30D:47I:48G:49G:50I:80T:81P:82V:84I 11 3pwr B 1 B ROC C 1 A 401 23289 23289 23289 POL_HV1BR 99 Protease 8R:23L:25D:27G:32V:47I:48G:49G:50I:81P:84I 11 3s56 A 1 A ROC C 1 A 201 23289 23289 23289 Q7SSI0_9HIV1 99 Protease 25D:27G:28A:29D:30D:32I:47V:48G:49G:50I:80T:81P:82I 11 3s56 B 1 B ROC C 1 A 201 23289 23289 23289 Q7SSI0_9HIV1 99 Protease 8R:23L:25D:27G:30D:48G:49G:50I:81P:82I:84I 11 3s56 B 1 B ROC D 1 B 101 23289 23289 23289 Q7SSI0_9HIV1 99 Protease 8R:10L:21E:23L:34E:81P:82I 11 3tkg A 1 A ROC G 1 B 801 23289 23289 23289 POL_HV1BR 103 Protease 27L:29D:31G:32A:33D:34D:51I:52G:53G:54I:84T:85P:86V:88I 11 3tkg B 1 B ROC G 1 B 801 23289 23289 23289 POL_HV1BR 99 Protease 12R:27L:29D:31G:32A:34D:51I:52G:53G:54I:85P:88I 11 3tkg C 1 C ROC I 1 C 901 23289 23289 23289 POL_HV1BR 103 Protease 29D:31G:32A:33D:34D:51I:52G:53G:54I:84T:85P:86V:88I 11 3tkg D 1 D ROC I 1 C 901 23289 23289 23289 POL_HV1BR 99 Protease 12R:27L:29D:31G:34D:36V:51I:52G:53G:54I:85P:86V:88I 11 3tl9 A 1 A ROC C 1 A 401 23289 23289 23289 POL_HV1BR 99 Protease 29D:31G:32A:33D:34D:51I:52G:53G:54I:84T:85P:86V:88I 11 3tl9 B 1 B ROC C 1 A 401 23289 23289 23289 POL_HV1BR 103 Protease 12R:27L:29D:31G:34D:36V:51I:52G:53G:54I:85P:86V:88I 11 4qgi A 1 A ROC C 1 A 101 23289 23289 23289 POL_HV1LW 99 Protease 25D:27G:28A:29D:30D:47I:48T:49G:50I:80T:82V 11 4qgi B 1 B ROC C 1 A 101 23289 23289 23289 POL_HV1LW 99 Protease 8R:23L:25D:27G:28A:32V:47I:48T:49G:50I:81P:82V:84I 11 5kqx A 1 A ROC C 1 A 101 23289 23289 23289 C8BD48_9HIV1 99 Protease E35D-SQV 25N:27G:28A:29D:30D:47I:48G:49G:50I:80T:81P:82V:84I 11 5kqx B 1 B ROC C 1 A 101 23289 23289 23289 C8BD48_9HIV1 99 Protease E35D-SQV 8R:23L:25N:27G:32V:47I:48G:49G:50I:81P:84I 11 5kr2 A 1 A ROC E 1 A 101 23289 23289 23289 V5YAB1_9HIV1 99 Protease PR5-SQV 25N:27G:28A:29D:30D:47I:48G:49G:50I:80T:81P 11 5kr2 B 1 B ROC E 1 A 101 23289 23289 23289 V5YAB1_9HIV1 99 Protease PR5-SQV 23L:25N:27G:28A:30D:47I:48G:49G:50I:81P:82V:84I 11 5kr2 C 1 C ROC F 1 C 101 23289 23289 23289 V5YAB1_9HIV1 99 Protease PR5-SQV 25N:27G:28A:29D:30D:47I:48G:49G:50I:80T:81P 11 5kr2 D 1 D ROC F 1 C 101 23289 23289 23289 V5YAB1_9HIV1 99 Protease PR5-SQV 8R:23L:25N:27G:47I:48G:49G:50I:81P:82V:84I 11 2f3k A 1 A RO1 F 1 A 506 23289 23289 23289 POL_HV1A2 99 Protease 8R:23L:25D:27G:28A:47I:48G:49G:50I:81P:84I 11 2f3k B 1 B RO1 F 1 A 506 23289 23289 23289 POL_HV1A2 99 Protease 25D:27G:28A:29D:30D:32V:47I:48G:49G:50I:80T:81P:84I 11 1hpx A 1 A KNI C 1 B 900 23289 23289 23289 POL_HV1BR 99 HIV-1 PROTEASE 8R:25D:27G:28A:47I:48G:49G:50I:81P:82V:84I 11 1hpx B 1 B KNI C 1 B 900 23289 23289 23289 POL_HV1BR 99 HIV-1 PROTEASE 25D:27G:28A:29D:30D:32V:48G:49G:50I:84I 11 2zye A 1 A KNI C 1 B 900 23289 23289 23289 Q9EKL4_9HIV1 99 protease 8R:23L:25D:27G:28A:29D:30D:48G:49G:50I:81P:82V 11 2zye B 1 B KNI C 1 B 900 23289 23289 23289 Q9EKL4_9HIV1 99 protease 25D:27G:28A:29D:30D:48G:49G:50I:53F:84I 11 3fx5 A 1 A KNI D 1 B 900 23289 23289 23289 Q9EKL4_9HIV1 99 protease 8R:23L:25D:27G:28A:48G:49G:50I:81P:82V:84I 11 3fx5 B 1 B KNI D 1 B 900 23289 23289 23289 Q9EKL4_9HIV1 99 protease 25D:27G:28A:29D:30D:32V:47I:48G:49G:50I:53F:81P:84I 11 1ohr A 1 A 1UN C 1 A 201 23289 23289 23289 Q9Q288_9HIV1 99 ASPARTYLPROTEASE 25D:27G:28A:29D:30D:49G:50I:80T:81P:82V:84I 11 1ohr B 1 B 1UN C 1 A 201 23289 23289 23289 Q9Q288_9HIV1 99 ASPARTYLPROTEASE 23L:25D:27G:28A:32V:47I:48G:49G:50I:81P:82V:84I 11 2pym A 1 A 1UN C 1 A 1001 23289 23289 23289 POL_HV1BR 99 PROTEASE RETROPEPSIN 25D:27G:28A:29D:30N:48G:49G:50I:80T:81P:84I 11 2pym B 1 B 1UN C 1 A 1001 23289 23289 23289 POL_HV1BR 99 PROTEASE RETROPEPSIN 8R:23L:25D:27G:32V:47I:48G:49G:50I:82V:84I 11 2pyn A 1 A 1UN C 1 A 1001 23289 23289 23289 POL_HV1BR 99 PROTEASE RETROPEPSIN 25D:27G:28A:29D:30N:48G:49G:50I:80T:81P:84I 11 2pyn B 1 B 1UN C 1 A 1001 23289 23289 23289 POL_HV1BR 99 PROTEASE RETROPEPSIN 8R:23L:25D:27G:32V:47I:48G:49G:50I:81P:82V:84I 11 2q63 A 1 A 1UN C 1 A 1001 23289 23289 23289 POL_HV1BR 99 PROTEASE RETROPEPSIN 25D:27G:28A:29D:30N:48G:49G:50I:80T:81P:84I 11 2q63 B 1 B 1UN C 1 A 1001 23289 23289 23289 POL_HV1BR 99 PROTEASE RETROPEPSIN 8R:23L:25D:27G:28A:30N:32V:47I:48G:49G:50I:82V:84I 11 2q64 A 1 A 1UN C 1 B 1001 23289 23289 23289 POL_HV1BR 99 PROTEASE RETROPEPSIN 25D:27G:28A:29D:30N:47I:48G:49G:50I:80T:81P:84I 11 2q64 B 1 B 1UN C 1 B 1001 23289 23289 23289 POL_HV1BR 99 PROTEASE RETROPEPSIN 8R:23L:25D:27G:28A:30N:32V:47I:48G:49G:50I:81P:82V:84I 11 2qak A 1 A 1UN C 1 A 1001 23289 23289 23289 POL_HV1BR 99 PROTEASE RETROPEPSIN 25D:27G:28A:29D:30N:48G:49G:50I:80T:81P:82V:84I 11 2qak B 1 B 1UN C 1 A 1001 23289 23289 23289 POL_HV1BR 99 PROTEASE RETROPEPSIN 8R:23L:25D:27G:28A:30N:32V:47I:48G:49G:50I:82V:84I 11 3ekx A 1 A 1UN C 1 B 201 23289 23289 23289 POL_HV1A2 99 Protease 25D:27G:28A:29D:30D:32V:48G:49G:50I:80T:81P:84I 11 3ekx B 1 B 1UN C 1 B 201 23289 23289 23289 POL_HV1A2 99 Protease 8R:25D:27G:28A:30D:32V:47I:48G:49G:50I:81P:82V:84I 11 3el0 A 1 A 1UN C 1 A 201 23289 23289 23289 POL_HV1A2 99 Protease 25D:27G:28A:29D:30D:80T:81P:84I 11 3el0 B 1 B 1UN C 1 A 201 23289 23289 23289 POL_HV1A2 99 Protease 23L:25D:27G:32V:47I:48V:49G:50I:81P:82A:84I 11 3el5 A 1 A 1UN I 1 B 201 23289 23289 23289 POL_HV1A2 99 Protease 23L:25D:27G:28A:29D:30D:32V:47I:48G:49G:50I:81P:82T 11 3el5 B 1 B 1UN I 1 B 201 23289 23289 23289 POL_HV1A2 99 Protease 25D:27G:28A:29D:30D:32V:48G:49G:50I:80T:81P:82T:84V 11 1b6l A 1 A PI4 E 1 A 201 23289 23289 23289 POL_HV1A2 99 RETROPEPSIN 25D:27G:28A:29D:30D:48G:49G:50I:82V:84I 11 1b6l B 1 B PI4 E 1 A 201 23289 23289 23289 POL_HV1A2 99 RETROPEPSIN 8R:23L:25D:27G:47I:48G:49G:50I:81P:82V:84I