#rank pdb_id asym_id(protein) oper_expression(prot) auth_asym_id(prot) comp_id(comp) asym_id(comp) oper_expression(comp) auth_asym_id(comp) auth_seq_id(comp) cluster95(prot) cluster40(prot) clusterE4(prot) uniprot_id(prot) nresidue(prot) pdbx_description(prot) seq_id_aa_contact(prot) 1 6xcy A 1 A RIT B 1 A 401 73060 39162 28428 PEPA_PIG 325 Pepsin A 13E:32D:34G:35S:74T:75Y:76G:77T:111F:112L:120I:189Y:215D:217G:218T:219S:289M:291V:300I 2 3prs A 1 A RIT B 1 A 1001 73604 39349 28428 CARP_CRYPA 330 Endothiapepsin 10I:11D:15D:16A:33D:35D:37G:77I:78S:79Y:80G:81D:119D:125L:133L:135T:194F:217I:219D:221G:222T:223T:226Y:300I:304I 3 3q70 A 1 A RIT B 1 A 2001 75159 40068 28428 CARP2_CANAL 334 Candidapepsin-2 12V:13T:30I:32D:34G:35S:82I:83G:84Y:85G:88S:119I:131N:193E:218D:220G:221T:222T:225Y:305I 4 4eyr A 1 A RIT C 1 B 301 24272 18257 17807 Q000H7_9HIV1 99 HIV-1 PROTEASE 23L:25N:27G:28A:29D:30D:32V:50I:82T 4 4eyr B 1 B RIT C 1 B 301 24272 18257 17807 Q000H7_9HIV1 99 HIV-1 PROTEASE 8R:25N:27G:28A:29D:30D:81P:82T 5 7ve0 A 1 A RIT C 1 A 401 73184 39630 28428 Q8I6V3_PLAF7 329 Plasmepsin II 16I:17M:34I:36D:38G:77M:78N:79Y:80V:81S:113F:116T:133L:194Y:216D:218G:219T:220S:246F:290N:292I:296F:302I 5 7ve0 B 1 B RIT L 1 B 401 73184 39630 28428 Q8I6V3_PLAF7 326 Plasmepsin II 16I:36D:38G:77M:78N:79Y:80V:81S:82G:113F:116T:133L:194Y:216D:218G:219T:220S:221A:246F:288M:290N:292I:296F:302I 6 3tne A 1 A RIT C 1 A 401 74779 40068 28428 B8YPM3_CANPA 339 Secreted aspartic protease 12P:30I:32D:34G:35S:76I:77R:78Y:79G:80D:82S:113V:114D:125N:220D:222G:223T:224T:227Y:303I 6 3tne B 1 B RIT D 1 B 401 74779 40068 28428 B8YPM3_CANPA 339 Secreted aspartic protease 30I:32D:34G:35S:76I:77R:78Y:79G:80D:82S:113V:114D:117I:125N:220D:222G:223T:224T:227Y:301D:303I 7 5veu A 1 A RIT N 1 A 602 88115 46827 32549 CP3A5_HUMAN 462 Cytochrome P450 3A5 84R:85R:98S:99L:189F:192F:194F:199F:219L:220F:280I:283F:284A:288T:349A:459G:460L 7 5veu B 1 B RIT P 1 B 602 88115 46827 32549 CP3A5_HUMAN 458 Cytochrome P450 3A5 85R:98S:99L:189F:194F:220F:280I:283F:284A:288T:349A:350I:353E:459G:460L 7 5veu H 1 H RIT W 1 H 602 88115 46827 32549 CP3A5_HUMAN 459 Cytochrome P450 3A5 84R:85R:98S:99L:189F:192F:193G:199F:219L:220F:280I:283F:284A:288T:353E:459G:460L 8 1sh9 A 1 A RIT C 1 B 301 24091 18257 17807 POL_HV1BR 99 POL polyprotein 25D:27G:28A:29D:32I:47I:48G:49G:50I:81P 8 1sh9 B 1 B RIT C 1 B 301 24091 18257 17807 POL_HV1BR 99 POL polyprotein 25D:27G:30D:32I:47I:48G:49G:50I:81P:82A 8 2b60 A 1 A RIT D 1 B 100 24091 18257 17807 Q7SMT3_9HIV1 99 Gag-Pol polyprotein 25D:27G:28A:30D:32I:47I:48G:49G:50I:81P:82A:84I 8 2b60 B 1 B RIT D 1 B 100 24091 18257 17807 Q7SMT3_9HIV1 99 Gag-Pol polyprotein 25D:27G:28A:29D:48G:49G:50I:82A:84I 9 4njv A 1 A RIT E 1 A 500 24106 18257 17807 Q9J006_9HIV1 99 Protease 25D:27G:28A:29D:32V:48G:49G:50I:82T:84I 9 4njv B 1 B RIT E 1 A 500 24106 18257 17807 Q9J006_9HIV1 99 Protease 8R:25D:27G:29D:30D:48G:49G:50I:81P:82T:84I 9 4njv C 1 C RIT F 1 D 500 24106 18257 17807 Q9J006_9HIV1 99 Protease 25D:27G:28A:29D:32V:48G:49G:50I:82T:84I 9 4njv D 1 D RIT F 1 D 500 24106 18257 17807 Q9J006_9HIV1 99 Protease 8R:25D:27G:28A:29D:30D:32V:48G:49G:50I:81P:82T:84I 10 1hxw A 1 A RIT C 1 B 301 23194 18257 17807 POL_HV1Z2 99 HIV-1 PROTEASE 25D:27G:28A:29D:30D:48G:49G:50I:81P:82V:84I 10 1hxw B 1 B RIT C 1 B 301 23194 18257 17807 POL_HV1Z2 99 HIV-1 PROTEASE 8R:23L:25D:27G:28A:29D:30D:32V:48G:49G:50I:81P:82V 10 1n49 A 1 A RIT E 1 B 301 23194 18257 17807 POL_HV1A2 99 Protease 25N:27G:28A:29D:48G:49G:50I:81P:82A:84I 10 1n49 B 1 B RIT E 1 B 301 23194 18257 17807 POL_HV1A2 99 Protease 8R:25N:27G:28A:30D:32V:47I:48G:49G:50I:81P:84I 10 1n49 C 1 C RIT F 1 D 401 23194 18257 17807 POL_HV1A2 99 Protease 8R:25N:27G:28A:30D:32V:47I:48G:49G:50I:81P:84I 10 1n49 D 1 D RIT F 1 D 401 23194 18257 17807 POL_HV1A2 99 Protease 25N:27G:28A:29D:48G:49G:50I:81P:84I 10 1rl8 A 1 A RIT C 1 A 9001 23194 18257 17807 POL_HV1BR 99 protease RETROPEPSIN 8R:25D:27G:28A:29D:30D:32V:48G:49G:50I:81P 10 1rl8 B 1 B RIT C 1 A 9001 23194 18257 17807 POL_HV1BR 99 protease RETROPEPSIN 25D:27G:28A:29D:30D:48G:49G:50I:82A:84I 10 3ndw A 1 A RIT C 1 A 100 23194 18257 17807 Q7SSI0_9HIV1 99 Protease 8R:25D:27G:28A:29D:48G:49G:50I:81P:82V:84I 10 3ndw B 1 B RIT C 1 A 100 23194 18257 17807 Q7SSI0_9HIV1 99 Protease 8R:25D:27G:28A:29D:48G:49G:50I:82V:84I 10 3ndx A 1 A RIT C 1 A 100 23194 18257 17807 Q7SSI0_9HIV1 99 Protease 8R:25D:27G:28A:29D:48G:49G:50I:81P:82V:84I 10 3ndx B 1 B RIT C 1 A 100 23194 18257 17807 Q7SSI0_9HIV1 99 Protease 8R:25D:27G:28A:29D:30D:48G:49G:50I:82V:84I 10 4u7v A 1 A 3EN D 1 B 101 23194 18257 17807 Q9Q2G4_9HIV1 99 V-1 protease 25D:27G:28A:32V:48G:49G:50I:81P:82V:84I 10 4u7v B 1 B 3EN D 1 B 101 23194 18257 17807 Q9Q2G4_9HIV1 99 V-1 protease 25D:27G:28A:30D:48G:49G:50I:84I 10 4u7q A 1 A 3EM C 1 B 101 23194 18257 17807 Q9Q2G4_9HIV1 99 V-1 protease 8R:25D:27G:28A:29D:30D:47I:48G:50I:80T:81P:84I 10 4u7q B 1 B 3EM C 1 B 101 23194 18257 17807 Q9Q2G4_9HIV1 99 V-1 protease 25D:27G:28A:29D:30D:47I:48G:49G:50I:82V:84I 10 6pjm A 1 A OQV E 1 B 101 23194 18257 17807 Q8ULI9_9HIV1 99 Protease NL4-3 23L:25D:27G:28A:29D:30D:32V:47I:48G:49G:50I:81P:84I 10 6pjm B 1 B OQV E 1 B 101 23194 18257 17807 Q8ULI9_9HIV1 99 Protease NL4-3 8R:25D:27G:28A:29D:30D:48G:49G:50I:81P:84I 10 6pjh A 1 B OQG C 1 A 101 23194 18257 17807 Q8ULI9_9HIV1 99 Protease NL4-3 25D:27G:28A:29D:48G:49G:50I:81P:82V:84I 10 6pjh B 1 A OQG C 1 A 101 23194 18257 17807 Q8ULI9_9HIV1 99 Protease NL4-3 8R:25D:27G:28A:29D:30D:48G:49G:50I:81P:82V:84I 11 3nxu A 1 A RIT H 1 A 600 88413 46827 32549 CP3A4_HUMAN 457 Cytochrome P450 3A4 35F:83R:86F:97S:98I:188L:189L:191F:193F:202T:219F:279I:282F:283A:287T:347I:348A:350R:352E:459G 11 3nxu B 1 B RIT L 1 B 600 88413 46827 32549 CP3A4_HUMAN 457 Cytochrome P450 3A4 31Y:83R:86F:92M:97S:98I:188L:189L:191F:193F:202T:219F:279I:282F:283A:287T:347I:348A:350R:351L:352E:459G 11 5vc0 A 1 A RIT C 1 A 602 88413 46827 32549 CP3A4_HUMAN 463 Cytochrome P450 3A4 37F:56D:85R:86R:88F:99S:100I:190L:191L:193F:195F:204T:281I:284F:285A:289T:349I:350A:352R 11 5vc0 A 2 A RIT C 2 A 602 88413 46827 32549 CP3A4_HUMAN 463 Cytochrome P450 3A4 37F:56D:85R:86R:88F:99S:100I:190L:191L:193F:195F:204T:281I:284F:285A:289T:349I:350A:352R 11 5vc0 A 3 A RIT C 3 A 602 88413 46827 32549 CP3A4_HUMAN 463 Cytochrome P450 3A4 37F:56D:85R:86R:88F:99S:100I:190L:191L:193F:195F:204T:281I:284F:285A:289T:349I:350A:352R 11 5vc0 A 4 A RIT C 4 A 602 88413 46827 32549 CP3A4_HUMAN 463 Cytochrome P450 3A4 37F:56D:85R:86R:88F:99S:100I:190L:191L:193F:195F:204T:281I:284F:285A:289T:349I:350A:352R 11 5vce A 1 A RIT C 1 A 602 88413 46827 32549 CP3A4_HUMAN 457 Cytochrome P450 3A4 85R:86R:87P:88F:99S:100I:192R:193F:195F:200F:203I:204T:221F:281I:284F:285A:289T:349I:350A:352R:354E 11 5vce A 2 A RIT C 2 A 602 88413 46827 32549 CP3A4_HUMAN 457 Cytochrome P450 3A4 85R:86R:87P:88F:99S:100I:192R:193F:195F:200F:203I:204T:221F:281I:284F:285A:289T:349I:350A:352R:354E 11 5vce A 3 A RIT C 3 A 602 88413 46827 32549 CP3A4_HUMAN 457 Cytochrome P450 3A4 85R:86R:87P:88F:99S:100I:192R:193F:195F:200F:203I:204T:221F:281I:284F:285A:289T:349I:350A:352R:354E 11 5vce A 4 A RIT C 4 A 602 88413 46827 32549 CP3A4_HUMAN 457 Cytochrome P450 3A4 85R:86R:87P:88F:99S:100I:192R:193F:195F:200F:203I:204T:221F:281I:284F:285A:289T:349I:350A:352R:354E 11 4i4g A 1 A Z8Z C 1 A 602 88413 46827 32549 CP3A4_HUMAN 459 Cytochrome P450 3A4 56D:85R:86R:88F:99S:100I:190L:191L:193F:204T:221F:281I:284F:285A:289T:350A:352R:354E 11 4i4g A 2 A Z8Z C 2 A 602 88413 46827 32549 CP3A4_HUMAN 459 Cytochrome P450 3A4 56D:85R:86R:88F:99S:100I:190L:191L:193F:204T:221F:281I:284F:285A:289T:350A:352R:354E 11 4i4g A 3 A Z8Z C 3 A 602 88413 46827 32549 CP3A4_HUMAN 459 Cytochrome P450 3A4 56D:85R:86R:88F:99S:100I:190L:191L:193F:204T:221F:281I:284F:285A:289T:350A:352R:354E 11 4i4g A 4 A Z8Z C 4 A 602 88413 46827 32549 CP3A4_HUMAN 459 Cytochrome P450 3A4 56D:85R:86R:88F:99S:100I:190L:191L:193F:204T:221F:281I:284F:285A:289T:350A:352R:354E 11 4i4h A 1 A Z9Z C 1 A 602 88413 46827 32549 CP3A4_HUMAN 457 Cytochrome P450 3A4 56D:86R:88F:99S:100I:190L:191L:193F:195F:204T:221F:281I:284F:285A:289T:349I:354E 11 4i4h A 2 A Z9Z C 2 A 602 88413 46827 32549 CP3A4_HUMAN 457 Cytochrome P450 3A4 56D:86R:88F:99S:100I:190L:191L:193F:195F:204T:221F:281I:284F:285A:289T:349I:354E 11 4i4h A 3 A Z9Z C 3 A 602 88413 46827 32549 CP3A4_HUMAN 457 Cytochrome P450 3A4 56D:86R:88F:99S:100I:190L:191L:193F:195F:204T:221F:281I:284F:285A:289T:349I:354E 11 4i4h A 4 A Z9Z C 4 A 602 88413 46827 32549 CP3A4_HUMAN 457 Cytochrome P450 3A4 56D:86R:88F:99S:100I:190L:191L:193F:195F:204T:221F:281I:284F:285A:289T:349I:354E 11 4k9w A 1 A 7AW F 1 A 602 88413 46827 32549 CP3A4_HUMAN 458 Cytochrome P450 3A4 33Y:37F:56D:85R:86R:88F:99S:190L:191L:193F:195F:204T:221F:281I:285A:289T:349I:354E:462L 11 4k9w B 1 B 7AW H 1 B 602 88413 46827 32549 CP3A4_HUMAN 457 Cytochrome P450 3A4 56D:86R:88F:99S:190L:191L:195F:204T:221F:281I:284F:285A:289T:349I:354E:461G 11 4k9w C 1 C 7AW J 1 C 602 88413 46827 32549 CP3A4_HUMAN 458 Cytochrome P450 3A4 33Y:56D:85R:86R:88F:99S:190L:193F:204T:221F:281I:284F:285A:289T:349I:354E:462L 11 4k9w D 1 D 7AW L 1 D 602 88413 46827 32549 CP3A4_HUMAN 458 Cytochrome P450 3A4 33Y:56D:86R:88F:99S:190L:191L:193F:195F:204T:221F:281I:284F:285A:289T:349I:352R:354E:461G 11 3tjs A 1 A D0R C 1 A 600 88413 46827 32549 CP3A4_HUMAN 449 Cytochrome P450 3A4 88F:99S:190L:281I:284F:285A:289T:349I:350A:461G 11 4k9x A 1 A 8AW C 1 A 602 88413 46827 32549 CP3A4_HUMAN 449 Cytochrome P450 3A4 85R:86R:88F:99S:190L:191L:221F:281I:284F:285A:289T:354E:462L